Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1780 ATGGAAGATGGAAGCGTCAACCTTCCTCCTGGGTTTTTCTTCTCTCCTACTGATGAAGAACTTGTTCTTCACTTTCTCTATTGCAAGGCTTCTCTCATTCCATGCCATCCTAACATCATCCCCGATCTCCATCCGTCTCAGCTTGCTCCTTGGGAATTAAATGGTAAGGCGTTGTTAAGTGGAAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAGCCAGAGAAAATGGGTATTGGAAGGACACAGGTGTCACGGAACCTATATTGTCAACCTTTGATAAGAAAGTGGGAATGAAGAAGTACTTGGGGTTCCACATAGGTGAAGCTCCACAAGGTACTGAAACCAGTTGGGTAATGCAAGAATATTATATATGTTCCTCTGGGTTTGACACTGCCTCATATCGAAGTGCTAGGAGAAGAAGAAAACATGATCAAAGTTGGAGCAAGTGGGTTTTGTGCAAAGTCTATGAGAAGATCAGGTCTCAACAAGGTGTAAACTGCTATAGCGATGATGATGACAGTGGATCAGAGCTTTCTTGGCTAGACGAAGTTTATCTGTCGTTGGATGATGATCTGGAAGAAATTGGCATGCCTATTTAG 606 0.4224 MEDGSVNLPPGFFFSPTDEELVLHFLYCKASLIPCHPNIIPDLHPSQLAPWELNGKALLSGNQYYFFTKVNENRARENGYWKDTGVTEPILSTFDKKVGMKKYLGFHIGEAPQGTETSWVMQEYYICSSGFDTASYRSARRRRKHDQSWSKWVLCKVYEKIRSQQGVNCYSDDDDSGSELSWLDEVYLSLDDDLEEIGMPI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1780 201 PANTHER NAC TRANSCRIPTION FACTOR 56 2 198 - -
Gso4g1780 201 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Gso4g1780 201 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 198 - -
Gso4g1780 201 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Gso4g1780 201 Pfam No apical meristem (NAM) protein 9 125 IPR003441 GO:0003677|GO:0006355
Gso4g1780 201 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1780 Gso-Chr4 47985747 47987158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1780 4 165 NAC Transcription Factor Family AT1G61110 40.351 7.49e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso4g1780 NAM 8.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1780 - - gmx:100170711 426.017