Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1779 ATGAAGAAAGAAGGGTGTGAGGTTGAGGCAATAGGCATCAACTACAAGATTCGTACAAAGACAACAGAGCAACCTTTTAAAATCTTCACCAAACCTCCACAATCGAATAGGGAAGATGTTCATGAAGCAAAAGAGGAAGAAAGGCCATGCAGTGGAGTTAGGCATGTCCTCAAGGATGTGAATTGCATGGCCAAGCCATGGGAAATTTCGGCAATTGTTGGGCCAAGTGGAGCTGGAAAATCATCCCTTCTTGAGATCCTTGCTGGTAAAGCTAGTCCACAAAGTGGGTCTATCTTGGTGAATCAAGAACCTGTGGATAAAGCTAAGTTCAGAAAATTTTCAGGGTATGTTACACAAAAGGATACCTTGTTTCCCTTACTTACAGTTGAAGAAACCATTATGTTTATTGCAAAGTTAAGGCTAAATCTTCCTCAGGAGCAATTATGCTACAGGGTCAAGTCACTGATTCTAGAGCTTGGTCTTAGCCATGTCGCCAGGACTAGAATTGGAGATGAAAGGGTCCGAGGCATTTCCGGTGGTGAGAGACGCCGAGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATTTTGGATGAACCAACTTCAGGGCTTGACAGTACTTCAGCTTTGCAAATAATTGAAATGCTTAAAGTCATGGCTGACTCTAGGGGAAGAACTATAATCCTAAGTATCCACCAACCCGGGTACAGAATAGTGAAGTTGTTCAACTCATTACTGTTATTGGCCAATGGCAATGTGTTGCACCATGGCACTGTGGATTTGCTGGGTGTGAATCTAAGGCTAATGGGTTTAGAGCTTCCTCTTCATGTTAATGTAGTTGAGTTTGCCATTGATTCCATTGAGACTATTCAGCAACAACAAAAATCAGAGCACGTTCAGCTAGAAGTGCCTCGGCGATTACCAGGGACAATGCAACAAAAGAAAGGTGGTGATCTAGGCGAGAGTAGAAGTGGTAAGTTTACTTTGCAACAGCTCTTTCAACAATCCAAGATAATTGACATAGAAATCATTAGTTCGGGAATGGATATCACACGTGATTTTGCTAATTCTGGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCCTTCGCACAACGGAACTCTTTGCTTGCAGGACAATTCAGATGCTGGTTTCTGGACTGGTTTTGGGCTCAGTCTTTTGTAATCTCAAGGATGGTCTAGTGGGAGCAGAAGAAAGAGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTATCAAGCACCACCGAAGCTCTACCAATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACCTCCAGTGGAAGCTACAGAGTTTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTATTCGCAATGCCTCTGTACTGGCTCATTGGTCTCAACAGGAATTTCACGGCAGTTTTGTACTTTTTGATGCTAATTTGGCTAGTTCTTTGCACCGCAAATTCGATTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGGAATTCAATGATCGCAGGTGTCATCGGCTCGTTTCTCTTGTTCTCTGGCTACTTCATATCAAAACATGAAATTCCGAATTACTGGATTTTCATGCATTATATATCCCCATTTAAGTATCCCTTTGAAGGGTTCCTAATAAATGAGTTCTCCAACTCGAACAACTGCTTGGAGTACTTGTTTGGGGAATGTGTGGTGAGAGGAGAGGATGTACTTAAAGAAGCAAAGCTTGGAGGGGAGACTAGTAGATGGAAGAATGTTGGGGTGATGGTGTGCTTCATCTTTGTTTACAGGTTCATTTCTTATGTAATTCTTAGGTGCAGATGCTCGCAAGGAGTCATCCTAAAAGTATGA 1923 0.4181 MKKEGCEVEAIGINYKIRTKTTEQPFKIFTKPPQSNREDVHEAKEEERPCSGVRHVLKDVNCMAKPWEISAIVGPSGAGKSSLLEILAGKASPQSGSILVNQEPVDKAKFRKFSGYVTQKDTLFPLLTVEETIMFIAKLRLNLPQEQLCYRVKSLILELGLSHVARTRIGDERVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIEMLKVMADSRGRTIILSIHQPGYRIVKLFNSLLLLANGNVLHHGTVDLLGVNLRLMGLELPLHVNVVEFAIDSIETIQQQQKSEHVQLEVPRRLPGTMQQKKGGDLGESRSGKFTLQQLFQQSKIIDIEIISSGMDITRDFANSGLRETMILTHRFSKNILRTTELFACRTIQMLVSGLVLGSVFCNLKDGLVGAEERVGLFAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFAMPLYWLIGLNRNFTAVLYFLMLIWLVLCTANSIVVCFSALVPNFIVGNSMIAGVIGSFLLFSGYFISKHEIPNYWIFMHYISPFKYPFEGFLINEFSNSNNCLEYLFGECVVRGEDVLKEAKLGGETSRWKNVGVMVCFIFVYRFISYVILRCRCSQGVILKV* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1779 640 Gene3D - 43 308 IPR027417 -
Gso4g1779 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 264 IPR027417 -
Gso4g1779 640 Pfam ABC-2 type transporter 365 573 IPR013525 GO:0016020|GO:0140359
Gso4g1779 640 SMART AAA_5 66 257 IPR003593 -
Gso4g1779 640 Pfam ABC-2 type transporter 235 306 IPR043926 GO:0140359
Gso4g1779 640 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
Gso4g1779 640 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 631 - -
Gso4g1779 640 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 278 IPR003439 GO:0005524
Gso4g1779 640 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 1 631 - -
Gso4g1779 640 Pfam ABC transporter 57 205 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1779 Gso-Chr4 47970766 47973126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1779 55 283 Calmodulin-binding Proteins AT2G36910 25.417 1.20e-13 72.8