Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1771 ATGAAGTTAATCGGCGACGGTGCCGGTGGCCGGAAAGTTCTCGTCGGCGTTAAATTAGATCCTCGCAGCCGCGAATTGCTGACGTGGGCTCTCGTCAAGGTCGCCGAGCCCGGCGACCTCGTCATTGCTCTTCACGTCCTTGACACCATCACTGAGGGAACGGCGTCGCTGTTATCTCTTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGGTTGGTCTGAGGCTTAAAGTGTGTCGCGGTGACTCGGTTCGGAAGGCCTTGGTGCAAGAGGCGAAGGCGTTTGGCGTTTCCACCGTGATTTTGGGAACTTCGAAATCTCATCACACTATTCGGTCTTCCGCGTGGGTTGCAAAGTACTGCGCGAAGAAATTGCCCAAGTGTATCTCTGTCTTCTCCGTTGATAATGGCAAAATCGCGTTCCGGAGAGAAGCTAATGGAAATTGCAGTGATCGAGAGAAATTGTGTGAAGGATCGAGTTTGTCGTCAAAATCATTGGTGGTTTATACAAATAAGAATATGAAGAGTTGTGGAAGTTGTGAATTGCAAGAGTGTTCTGGAAATGAGTTTGAGCAAGGGTTGTGTGGGGATGTTGAGAAGGAGAATCCGCTTGCTTTGGTTCCGTTTAAGAAGCTTGATGATGCTCCTTGTTTTTCGGTTTTGGTGGATAACTCGAAGCATAAACCTGGTTGGTCACTGCTTCGTCACGTGTTTCATCACAAGAAGCATACCCATAAGTCTTCTATGAAGAATACGTTTGTTTTTCAAAGGGCATTGCGGCAGCCGAATTGTCATTCTTCTGCTGTGGTCCATCCTGATCATAAACAAATTAGTATTGAGCAGATTGATGATTCCCCCCTTGATGGGGTGAGTGGTGCCATTGTACCATTTGAATCTACTACAACTACTATCTTTACTCTTCCCTCCATTTGCAGTGATTTGAGTAGCCTTCCCGAAGAATTGTTGGTATTACAAGAAAAGTACACGTCCTCGTGCCGATTATATAGTTTGCAGGAACTTGTATCTGCGACCTCCAACTTTGTATCTGAAAATTTGGTTGGCAAAGGTGGCTGTAGTTATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCTGAAAACGTGATAAAGGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCGCCACAAGAACATAATATCTATTTCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTGTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGCAACAAGGTGGACTGTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCCGTGGGTGTAGCTGAGGCATTGGATTATCTGCATAATGGCTGTGCTCAGGCTGTGATCCATAGGGATGTGAAATCTTCTAATATCCTTCTTGCAGATGATTTTGAGCCTCAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCATATTACTTGTACTGATGTGGCCGGAACTTTTGGATACCTCGCACCTGAGTACTTTATGCATGGTAGAGTGACTGATAAAATTGATGTATATTCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAATCTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACCAATTTTGGAAGGTGGGAAGTTTTCCCAGTTGCTTGATCCAAGCCTGGGCAGTGAATACAACACTTGCCAGATCAAGAGAATGATTTTGGCCGCTACTCTCTGCATTAGACGCATTCCTAGATTGCGGCCTCAAATCAACCTTATATTGAAACTTCTGCATGGTGATGAGGAGGTGATAAGATGGGCAGAACAAGAAGTTAATGCTCCACAGGAACTTGATGGATGTGATGAGGAACCAGTTCCAACTAACATTCAGTCCCACCTGAACCTTGCTTTACTAGACTTGGAGGATGATACGGTTTCTATCAGTAGCACTGAGCAGAGTGTCTCTCTGGAGGACTATTTGCAAGGAAGATGGAGTCGCTCTTCAAGTTTTGACTAA 2100 0.4481 MKLIGDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKVCRGDSVRKALVQEAKAFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCISVFSVDNGKIAFRREANGNCSDREKLCEGSSLSSKSLVVYTNKNMKSCGSCELQECSGNEFEQGLCGDVEKENPLALVPFKKLDDAPCFSVLVDNSKHKPGWSLLRHVFHHKKHTHKSSMKNTFVFQRALRQPNCHSSAVVHPDHKQISIEQIDDSPLDGVSGAIVPFESTTTTIFTLPSICSDLSSLPEELLVLQEKYTSSCRLYSLQELVSATSNFVSENLVGKGGCSYVYRGCLPDGKELAVKILKPSENVIKEFVQEIEIITTLRHKNIISISGFCLEGNHLLLVYDFLSRGSLEENLHGNKVDCSAFGWQERYKVAVGVAEALDYLHNGCAQAVIHRDVKSSNILLADDFEPQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYSFGVVLLELLSNRKPINNESPKGQESLVMWATPILEGGKFSQLLDPSLGSEYNTCQIKRMILAATLCIRRIPRLRPQINLILKLLHGDEEVIRWAEQEVNAPQELDGCDEEPVPTNIQSHLNLALLDLEDDTVSISSTEQSVSLEDYLQGRWSRSSSFD* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1771 699 SUPERFAMILY Protein kinase-like (PK-like) 336 625 IPR011009 -
Gso4g1771 699 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 7 693 - -
Gso4g1771 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gso4g1771 699 SMART serkin_6 355 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1771 699 Pfam Universal stress protein family 11 134 IPR006016 -
Gso4g1771 699 Gene3D Phosphorylase Kinase; domain 1 324 429 - -
Gso4g1771 699 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1771 699 Gene3D Transferase(Phosphotransferase) domain 1 430 643 - -
Gso4g1771 699 Gene3D HUPs 10 142 IPR014729 -
Gso4g1771 699 Pfam Protein kinase domain 357 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1771 699 PANTHER OS01G0253100 PROTEIN 7 693 IPR045271 GO:0004714|GO:0006468
Gso4g1771 699 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1771 Gso-Chr4 47827034 47830577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1771 338 621 Trihelix Transcription Factor Family AT1G68690 46.552 2.69e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso4g1771 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1771 - - gmx:100815722 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1771 4 47827034 47830577 Gso4g1771 4 47827034 47830577 ECH
Gso4g1771 4 47827034 47830577 Gso6g1307 6 12779330 12783091 GST
Gso14g1226 14 29099200 29103715 Gso4g1771 4 47827034 47830577 PCT
Gso13g0185 13 10723880 10728389 Gso4g1771 4 47827034 47830577 PCT
Gso4g1771 4 47827034 47830577 Gso14g1226 14 29099200 29103715 PCT
Gso4g1771 4 47827034 47830577 Gso13g0185 13 10723880 10728389 PCT