Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1751 ATGGGAGACGACAGTGGCAGCAACCGGTCAAAGCCGGAGTGGCTGCAGCAGTATGATCTAATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGCATCAAGTCTTCCACCAATCGCGGAAAATCCATCGCCATAAAAAAATTCAAGCAATCCAAGGATGGCGATGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTACTCAGGGAGATAACGCACGAGAATGTTGTGAAGCTTGTGAATGTTCACATTAATCATATGGACATGTCTCTCTATCTGGCTTTTGATTATGCAGAACACGACCTTTTTGAAATAATAAGACATCATAGGGACAAAGTCAATCAATCCATTAACCAGTATACTGTTAAATCGTTACTCTGGCAGTTGCTCAATGGACTAAACTATCTACACAGTAATTGGATAATACATCGGGACTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCACCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTTACTATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACTTTAAAGCCGCTATTCCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTCAAGGTTTTAGTGGACATTGTTACTGTGCCAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCACAACATATACAAGGACACAAATATGACAATGCTAGCCTCTGTAGTGTTTTACAACTATCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCACGAAAGCGCATAACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGACACATTTGTGAATTATCCCACACGTCCAGTGGATACAACAACAGATTTTGAAGGGACAGCCAACATGCAACCTTCACAGCCGGTTTCGTCTGGAGCTGCAGTTTCTGGCAACATGCCTGGTGGTCATGTTTCGAATAGATCTGTCCCTCGGCCAATGAATGTTGGTGGCATGCAGAGAATACCTCATCAGGCAATGCAGGGTTATAATCTCTCATCTCAGGCAGGGATGGGTGCTGGAATGAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAGCAACAGTTGAGAAGAAAAGATCAAATGGGTATGCCAGGATACCCTCCACAGCAGAAGTCAAGACGTATATAA 1410 0.4411 MGDDSGSNRSKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHMDMSLYLAFDYAEHDLFEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLVDIVTVPGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLCSVLQLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGDTFVNYPTRPVDTTTDFEGTANMQPSQPVSSGAAVSGNMPGGHVSNRSVPRPMNVGGMQRIPHQAMQGYNLSSQAGMGAGMNPGGIPMQRGVPQQQLRRKDQMGMPGYPPQQKSRRI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1751 469 SUPERFAMILY Protein kinase-like (PK-like) 13 336 IPR011009 -
Gso4g1751 469 MobiDBLite consensus disorder prediction 375 402 - -
Gso4g1751 469 SMART serkin_6 18 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1751 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Gso4g1751 469 MobiDBLite consensus disorder prediction 426 469 - -
Gso4g1751 469 ProSiteProfiles Protein kinase domain profile. 18 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1751 469 Pfam Protein kinase domain 18 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1751 469 Gene3D Transferase(Phosphotransferase) domain 1 101 348 - -
Gso4g1751 469 PANTHER CELL DIVISION PROTEIN KINASE 7 468 - -
Gso4g1751 469 Gene3D Phosphorylase Kinase; domain 1 5 100 - -
Gso4g1751 469 PANTHER CYCLIN-DEPENDENT KINASE E-1 7 468 - -
Gso4g1751 469 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Gso4g1751 469 CDD STKc_CDK8_like 17 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1751 Gso-Chr4 47638823 47645920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1751 11 469 Core Cell Cycle Gene Families AT5G63610 74.145 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Gso4g1751 Pkinase 8.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1751 K02208 - gmx:100813433 937.562