Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1739 ATGGCCGCAGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACTGCAGCAGCGAAACCAGCAAAACGTGTTCTTCCATGCTCAACGTAGCAGAACGCGAAGAAGCACTACCAGATTCCACTCATCCAAACGCTGCTTTAGTTCTTCCGCCTTTCCAAATGCGTCCGCGTTTCGCCGCGGCGCCGTGTGCCAGGTCGCCAGCACCGACTTCGAATCCGCCGCCAAAGCCGGAGAGGATCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGGAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCCACGTTGGCGGATAAGTTGCTTCAGGTTACCGGCACGGTGCACCAGCGAGAGATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTTGACTTCTCGTATGAGGTTTCTCGGTCACTCGCTGCATGTGAGGGTGCTCTTCTAGTAGTGGACGCTTCTCAGGGCGTTGAAGCACAAACCCTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTGGAAATTATCCCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCAGATCGAGTAATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGAAATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGAAGATACATCTAAAAAACCATTGAGGACTTTAATATTTGACAGCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAGGATTATTTTGCTGATGAAATTGGAGTTTTGTCTCCTAGTCAACTACAAGTTGAAGAATTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTGTTACTCACTATGGCAGAAAGGCTGACAATTCACTCCCTGGATATGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAGAAGCTGCAACTCAATGATGCTGCACTTAAGTTTGAACCTGAGACATCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAGGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAGAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGACCAGTTGAAGTCGAGAAGTAAGGGTTATGCTAGTATGGAGTATACCTTTGTCGGGTACACTGAAAGTAATTTAATTAAACTTGACATACGGATAAATGGTGACTGTGTGGAGCCATTGGCTACAATTGTGCACAATGATAAGGCATATTCGGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCGTGCATAGGATCAAAAGTGATCGCTAGTGAAGCGATATCCGCAATAAGGAAGGATGTACTAGCCAAATGCTACGGTGGGGATATTTCGAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTTCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGCTTCAACAACTCAACTTTCACCCACACTTATCTATCATTCTTCAAATTCGAAGCCTCCTAGCTCGGAACTGGAGTGTTCGGTTACAACACTGCTATCGTGAAGGCAATGCCCCAGCGGACTGGTTAGCTAAGCATGGTGCTTCTAACGCACCTTTTCTCTCCGTCCAGCCTCACCTTGCTGCTTTTGGCTGA 2253 0.4385 MAAEICGGSLFLSVKTQLQLQQRNQQNVFFHAQRSRTRRSTTRFHSSKRCFSSSAFPNASAFRRGAVCQVASTDFESAAKAGEDRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIEILNAIVARIPPPEDTSKKPLRTLIFDSYYDPYRGVIVYFRVVDGTIKKGDRVYFMASGKDYFADEIGVLSPSQLQVEELYAGEVGYLSASIRTVADARVGDTVTHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVHCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFREMKFIAENRASITYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYTESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKELQQLNFHPHLSIILQIRSLLARNWSVRLQHCYREGNAPADWLAKHGASNAPFLSVQPHLAAFG* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1739 750 CDD lepA_C 490 569 IPR035654 -
Gso4g1739 750 PANTHER TRANSLATION FACTOR GUF1-RELATED 81 683 IPR006297 GO:0005525
Gso4g1739 750 Hamap Elongation factor 4 [lepA]. 89 687 IPR006297 GO:0005525
Gso4g1739 750 SUPERFAMILY Translation proteins 271 376 IPR009000 -
Gso4g1739 750 Gene3D - 569 643 IPR038363 -
Gso4g1739 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 298 IPR027417 -
Gso4g1739 750 Gene3D Translation factors 275 374 - -
Gso4g1739 750 CDD LepA 95 272 - -
Gso4g1739 750 Pfam Reverse transcriptase-like 684 732 IPR002156 GO:0003676|GO:0004523
Gso4g1739 750 CDD EF4_II 280 365 - -
Gso4g1739 750 CDD EF4_III 382 457 - -
Gso4g1739 750 Pfam GTP-binding protein LepA C-terminus 577 683 IPR013842 -
Gso4g1739 750 Pfam Elongation factor Tu GTP binding domain 93 270 IPR000795 GO:0003924|GO:0005525
Gso4g1739 750 SMART EFG_C_a 487 575 IPR000640 -
Gso4g1739 750 SUPERFAMILY EF-G C-terminal domain-like 488 582 IPR035647 -
Gso4g1739 750 Gene3D Elongation Factor G (Translational Gtpase), domain 3 375 456 - -
Gso4g1739 750 TIGRFAM small_GTP: small GTP-binding protein domain 95 264 IPR005225 GO:0005525
Gso4g1739 750 TIGRFAM lepA: elongation factor 4 93 684 IPR006297 GO:0005525
Gso4g1739 750 Pfam Elongation factor Tu domain 2 294 364 IPR004161 GO:0005525
Gso4g1739 750 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 86 686 IPR027518 -
Gso4g1739 750 CDD RNase_H_like 693 731 IPR044730 -
Gso4g1739 750 Gene3D - 457 568 - -
Gso4g1739 750 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 81 683 - -
Gso4g1739 750 SUPERFAMILY EF-G C-terminal domain-like 381 459 IPR035647 -
Gso4g1739 750 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Gso4g1739 750 Pfam Elongation factor G C-terminus 488 573 IPR000640 -
Gso4g1739 750 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 273 IPR000795 GO:0003924|GO:0005525
Gso4g1739 750 Gene3D - 91 274 IPR027417 -
Gso4g1739 750 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Gso4g1739 750 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Gso4g1739 750 PRINTS GTP-binding elongation factor signature 163 173 IPR000795 GO:0003924|GO:0005525
Gso4g1739 750 PRINTS GTP-binding elongation factor signature 179 190 IPR000795 GO:0003924|GO:0005525
Gso4g1739 750 PRINTS GTP-binding elongation factor signature 215 224 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1739 Gso-Chr4 47478090 47488064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1739 92 335 Eukaryotic Initiation Factors Gene Family AT3G22980 33.852 4.02e-27 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1739 4 47478090 47488064 Gso6g1345 6 13207929 13217038 GST