Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1736 ATGTTTTGGGCATACAAAAATCCTCCACCTGCACACCTCTTCCTGATATTGAGTGATATAGGTTTTGCTGGCTTATTACACCGGATAAGCTTGAATAATTACAATATCTTGCTCGCTGTCTCAACGAATGCTCCTGTTCTCTCCACGGAAGCAACTATAACGTGGCAATGGTATAAATTGCTTAAGGGAGAAAATCTTATTGGAAAACATTTCAACCATCCTCCGGATGATCCATATGGTTCTTGGTATGGAAACTTTAGGGTGCCCCTTGAAAACCCATTCCCAGCCAAAACTAAACCAGATTCCTTAAAAATGAGTTCTAAAGGCTCATCTGATGATGACATTGTTGGGTCTGAGGATGCGAGTCGTAAAAGTCAGGAAAGATACACAACTTCAATGAATCGCTCTGCTGGAAATGATCAGACAACAGTGGATGACATTGGTACTGCAAACTATGAATCTGGAAATTTTAGAGCAAGGGACAAATGTGTGAATCCAACTAGAAAGGAGGTTGATGATGTTTGTCACAGCCCATATGCTTTTCAAGTTGATGACTGTCTGGTTGATAAAAAAACTGGTGGAAGTGATGAAACATATAGGAAAGGTCCAACATTCTTTGGCTGGATCAGAAGCCAGTGGCAATTTTGGAAAGGCAATGCAAAATCTGGTGATTCAACTGCTCATCAGAACAAGGTGGTTAATCATTTTGAGGATTCTAACTCATCTGAACTGGTAGACCAGACAGTCCAGACTGTTAGTGATTTTGAAGATAAGTCATCAGAACTGGACCAGAATGCTATTTGTTCTGGAAAGCCTGAGTTGTTTTCTAGCAGTTCCATTTGGGATGACATGGAATCTTTTATTTTCACCCGCAGAGGATCAGTTATTGTTTACGAGTCAAAAAACAGGGAGGATATGGCACGTAAATTATGGAAGAATGGACCCCCAGTTTTTAGATCTCTGTCTAAAAAAGATATCCTTCAATTGTTGGAGTTATTAATATCAGAAAAAAAGTGGTTGGAGGAAACCCCCACCCAAACATTTCCTTTTCAGTTTGACTCAGTGAAATATATAGTGAGGTTATATGGGTCTAGATATGATATGTTAAAAGATTGTGAGAAACTTGTAAGGGAGATATTGAGGGAACACCCAGATGGTTTTAGAATCAGTTCTTTTCCAAGATTTTTTGTTGTTAGGTATGGCTATCATCTTGATTTAGAGGAGCTTGGTTACCGAAAGTTGACAACCTTACTACAGATGATGTCGGGAGTTAAAGTAGAGTCCAATTATATTTATAGTTCCCACCAAAGATGGTAG 1317 0.391 MFWAYKNPPPAHLFLILSDIGFAGLLHRISLNNYNILLAVSTNAPVLSTEATITWQWYKLLKGENLIGKHFNHPPDDPYGSWYGNFRVPLENPFPAKTKPDSLKMSSKGSSDDDIVGSEDASRKSQERYTTSMNRSAGNDQTTVDDIGTANYESGNFRARDKCVNPTRKEVDDVCHSPYAFQVDDCLVDKKTGGSDETYRKGPTFFGWIRSQWQFWKGNAKSGDSTAHQNKVVNHFEDSNSSELVDQTVQTVSDFEDKSSELDQNAICSGKPELFSSSSIWDDMESFIFTRRGSVIVYESKNREDMARKLWKNGPPVFRSLSKKDILQLLELLISEKKWLEETPTQTFPFQFDSVKYIVRLYGSRYDMLKDCEKLVREILREHPDGFRISSFPRFFVVRYGYHLDLEELGYRKLTTLLQMMSGVKVESNYIYSSHQRW* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1736 438 CDD LOTUS 369 426 - -
Gso4g1736 438 MobiDBLite consensus disorder prediction 127 147 - -
Gso4g1736 438 MobiDBLite consensus disorder prediction 97 147 - -
Gso4g1736 438 Pfam OST-HTH Associated domain 302 350 IPR025677 -
Gso4g1736 438 Gene3D - 364 431 IPR041966 -
Gso4g1736 438 Pfam OST-HTH/LOTUS domain 369 428 IPR025605 -
Gso4g1736 438 PANTHER LIMKAIN B LKAP 1 92 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso4g1736 438 PANTHER LIMKAIN B LKAP 96 435 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso4g1736 438 PANTHER EMB|CAB71880.1 96 435 - -
Gso4g1736 438 PANTHER EMB|CAB71880.1 1 92 - -
Gso4g1736 438 ProSiteProfiles OST-type HTH domain profile. 368 438 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1736 Gso-Chr4 47430038 47431972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1736 1 63 C2H2 Transcription Factor Family AT5G61190 42.188 6.35e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1736 - - gsj:114410029 908.286