Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1733 ATGGATAAGTACGAGGCTGTTAAGGATTTGGGAGCTGGCAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGTCACCAAGGAGCTTGTAGCCATGAAATACATCGAGCGTGGCCCCAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTAGCAATAGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATTTCCGGTGTTCATTTCTGTCATACCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTCTAGATGGAAGTCCTGCACCTCGGTTGAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTGCACTCACGACCCAAATCAACAGTTGGAACACCAGCTTACATAGCACCGGAAGTTCTTTCTAGGCGAGAGTATGATGGAAAGTTGGCTGATGTATGGTCATGTGCGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGTAGGCACCTCCTCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAGGAATCTTCCAAGGGAGCTAACTGAATCTGCTCAAGCTATCTATTACCAGAGAGACAGCCCAAACTTTCACCTTCAAAGTGTGGATGAGATAATGAAAATTGTAGGAGAGGCAAGAAATCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGCTGGGAAGGTGAAGAAGATTTGGATGAAGAAGTGGAGGAAGAAGAGGATGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGCGAATTTCAAATTAGTTAA 1050 0.4343 MDKYEAVKDLGAGNFGVARLMRNKVTKELVAMKYIERGPKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCAVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRITIKEIKNHPWFLRNLPRELTESAQAIYYQRDSPNFHLQSVDEIMKIVGEARNPPPVSRPVKGFGWEGEEDLDEEVEEEEDEDEYDKRVKEVHASGEFQIS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1733 349 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1733 349 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1733 349 MobiDBLite consensus disorder prediction 304 349 - -
Gso4g1733 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gso4g1733 349 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso4g1733 349 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 342 - -
Gso4g1733 349 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Gso4g1733 349 SUPERFAMILY Protein kinase-like (PK-like) 2 296 IPR011009 -
Gso4g1733 349 PANTHER SERINE/THREONINE KINASE 2 342 - -
Gso4g1733 349 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Gso4g1733 349 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1733 349 MobiDBLite consensus disorder prediction 316 333 - -
Gso4g1733 349 CDD STKc_SnRK2 3 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1733 Gso-Chr4 47409563 47413155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1733 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 41.852 1.06e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso4g1733 Pkinase 7.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1733 K14498 - gmx:547811 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1733 4 47409563 47413155 Gso6g1353 6 13283047 13286632 GST
Gso5g1681 5 40090936 40094991 Gso4g1733 4 47409563 47413155 PCT
Gso8g0043 8 403224 407292 Gso4g1733 4 47409563 47413155 PCT
Gso4g1733 4 47409563 47413155 Gso5g1681 5 40090936 40094991 PCT
Gso4g1733 4 47409563 47413155 Gso8g0043 8 403224 407292 PCT