Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1731 ATGGGTAGATCCCCTTGTTGCGAGAAAGAACACACCAACAAAGGAGCTTGGACCAAAGAAGAAGACGAACGCCTCATCAACTACATCAAGCTCCATGGTGAAGGCTGTTGGAGATCCCTCCCCAAAGCTGCTGGCTTGCTGAGATGTGGCAAAAGTTGCCGACTCAGATGGATAAATTACCTCAGGCCTGATCTCAAGAGAGGCAACTTCACTGAAGAGGAAGATGAACTCATCATAAATCTCCACGGCTTACTTGGAAACAAATGGTCTTTGATAGCTGCAAGGTTACCGGGAAGAACCGATAACGAAATCAAAAACTATTGGAACACTCACATCAAGAGAAAACTCTACAGCCGCGGAATCGACCCACAAACCCATCGTCCACTCAACGCCTCCGCCACTCCGGCAACCACCGCCACAGCCACCGCAGTTCCATCTGCTAACAGCAGCAAGAAGATAAACAATAACAACAACAACATCGACAATGATATCAACAACAACAACAATGGTTTTCAGTTGGTGTCTAATAGTGCTTATGCAAACACAAAGATTGGAACCAACTTGGTTGCTGCTGAAGATTCTAACAGCAGCAGCGGCGTTACAACAGAAGAATCCGTCCCTCATCATCAACTCAACTTGGACCTTTCCATTGGCCTTCCTTCTCAACCCCAAGGTTCTTCGTTGAACCCAGAAAAGTTGAAACCAGAACCGCAAGAGCATGATGATCAGAAGCCACAGGTTTTGTATAAGTGGTATGGGAACATCACTAGCCAGCAAGGTGTGTGCCTGTGTTACAATCTAGGGCTTCAGAGTAACCAAACTTGTTATTGCAAAACCATGGGTACTGCTACTACTACTACTGCCACTGATAGTAATCTATATAGATTTTACAGACCCATGAATATTTAG 909 0.4532 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHGLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNASATPATTATATAVPSANSSKKINNNNNNIDNDINNNNNGFQLVSNSAYANTKIGTNLVAAEDSNSSSGVTTEESVPHHQLNLDLSIGLPSQPQGSSLNPEKLKPEPQEHDDQKPQVLYKWYGNITSQQGVCLCYNLGLQSNQTCYCKTMGTATTTTATDSNLYRFYRPMNI* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1731 302 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso4g1731 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso4g1731 302 MobiDBLite consensus disorder prediction 125 161 - -
Gso4g1731 302 CDD SANT 69 112 IPR001005 -
Gso4g1731 302 CDD SANT 16 61 IPR001005 -
Gso4g1731 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso4g1731 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso4g1731 302 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 252 - -
Gso4g1731 302 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gso4g1731 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso4g1731 302 MobiDBLite consensus disorder prediction 215 231 - -
Gso4g1731 302 SMART sant 66 114 IPR001005 -
Gso4g1731 302 SMART sant 13 63 IPR001005 -
Gso4g1731 302 MobiDBLite consensus disorder prediction 215 243 - -
Gso4g1731 302 Gene3D - 14 66 - -
Gso4g1731 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso4g1731 302 Gene3D - 69 116 - -
Gso4g1731 302 PANTHER TRANSCRIPTION FACTOR MYB7 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1731 Gso-Chr4 47374925 47376610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1731 1 234 MYB Transcription Factor Family AT4G38620 58.577 2.18e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g1731 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1731 K09422 - gmx:100808083 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1731 4 47374925 47376610 Gso6g1357 6 13320907 13322492 GST
Gso8g0046 8 432192 433899 Gso4g1731 4 47374925 47376610 PCT
Gso4g1731 4 47374925 47376610 Gso8g0046 8 432192 433899 PCT