Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1729 ATGTCGAGTTTCCACGTCGGCGGCAAGGTCGTGGACCAAGTCGATTTGCTGAGGAAGAAGCGATGGCCCTGGCGCCTTGACGTTTGGCCCTTCGCTATTCTCTACGGCGCGTGGCTTTCCACGATTCTTCCCAGCCTCGACTTCGTCGACGCCGCCATTGTCTTCGGCGCCCTCGTCTCGCTTCACATCCTGGTTTTTCTCTTCACCGGTTGGTCCGTTGATTTCAAATGCTTCGCCCATTATAGCAAGGTTAAGAATATTGATCAGGCAGATTCGTGCAAGATTACTCCGGCGAAGTTCTCGGGTTCGAAAGAAGTTGTGCCGCTTCATTCACGGAAAAGTTCTGCAGCTTCTTCATCAGCGGTGGATTTGGAAGAGAACTACTTCGATTTTAGAAAGCAATGTTTTGTGCATTCAAAGGAGAAGGGGACCTTTTGCAAGCTTTCCTACCCTACTAAAGAAACATTTGGATATTATCTCAAGTGTAGTGGCCATGGCTCTGAAGCTAAAGTTCTTGCTGCTACTGAGAAATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAACCTTTTTTCGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTAGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAAACTCTTACCGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTTCATCGCTGTGGCAAGTGGGTAAAACTCTCTGGTACAGATCTTTTGCCTGGTGATGTTGTCTCCATAGGTCGCTCTTCTGGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTCTATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTGACAGGCGAGTCTACTCCTCAATGGAAGATTTCAATCGCGGGTAGGGCGATGGAGGAGACATTGTCTGCAAAGCGAGATAAAAACCATGTGTTATTTGGTGGAACTAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTATCTTGAGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCCTGGTTGTATTTGCCCTTATTGCTGCTGGCTATGTGCTTGTTAAGGGGTTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCTCTGATTGCACTGGCACGGCGTGGGATTTTTTGCACAGAGCCTTTTCGAATACCATTTGCTGGAAAGGTTGATATATGCTGTTTTGACAAGACAGGGACACTTACATCTGATGACATGGAATTTTCTGGAGTTGTTGGGTTGAATGGAACTACAGATTTGGAATCTGATACGAGTAAAGTGCCTGTGCGAACAGTGGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAAAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTAGGGGAATTGACTGGAGTTATAAATCTGATGACAAGGCTGTTCCAAAAAAGGGAACTGGCCAACCTGTCCAAATTGTACATCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTGTTGTTCGCATTCAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCCCCTGAAGTTATACAAGATAGGCTCATTGATATACCACCATCATATGTTGAGACCTACAAAAAATACACACGTCAAGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTGATGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGTGGAGAGTAGACTTACTTTTGCAGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTATCTGAATTGAAAGAATCCTCACATGACTTAGTGATGATTACCGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCAAAACCAACATTAATCCTTGGCCCGACACGAAATGGTGAGGGATATAATTGGGTGTCCCCTGATGAGACTGAAAACATTCACTACAGTGAGAAAGAGGTCGAGTCTTTATCAGAAACTCATGATCTCTGTATTGGGGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCGGGTCATTCCTTATGTTAAGGTTTTTGCTAGAGTTGCTCCTGAGCAAAAAGAACTTATCATGACCACTTTCAAAACGGTGGGACGGTTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGAGCTTTGAAACAGGCCCATGTAGGAATTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAACTCCTCTTCAGATTCATCTAAGGAAGAAGGTTCAAAATCTGGCAAGCAAAAGAAATCTAAGCCTGCTAGTGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCACTAGTCACTCATCTGGTAACCGTCATCAGGCAGCTGTTGAGATGCAACGGCAGAAGCTTAAAAAGATGATGGACGAGCTTAATGAGGAGGGAGATGGTCGTGCACCCATTGTCAAGCTTGGGGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCCACCACTGATATAATTCGTCAAGGTAGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGTCTCAATTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTAGATGGTGTCAAGCTAGGTGACATACAAGCCACAATAAGTGGTGTCTTCACTGCTGCATTTTTCCTCTTTATCTCACATGCACGCCCTCTTCCCACTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTCCTGGGACAATTTTCTATTCACCTGCTTTTCCTGATCTCGTCTGTGAAAGAAGCTGAAAAACACATGCCAGATGAATGCATTGAGCCTGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCCTATATGGTGAGCATGATGCTTCAGGTGGCCACATTTGCTGTGAACTATATGGGCCATCCCTTCAACCAGAGTATTTCGGAAAACAGGCCGTTCCGGTATGCACTTGTTGCTGCTGTTGTTTTCTTTACTGTGATCACATCAGATCTCTTCAGGGACTTGAATGACTGGTTGAAGTTAGTGCCATTGCCAGCGGGATTAAGGGATAAACTATTGCTTTGGGCGTTTCTAATGTTTTTGGTTTGCTATTCGTGGGAGAGACTGTTGAGGTGGGCCTTCCCTGGCAAGATCCCAGCTTGGAAGAAGCGACAACGGCTTGCTGTATCTAATTTAGAAAAGAAACAGGTCTAA 3543 0.4383 MSSFHVGGKVVDQVDLLRKKRWPWRLDVWPFAILYGAWLSTILPSLDFVDAAIVFGALVSLHILVFLFTGWSVDFKCFAHYSKVKNIDQADSCKITPAKFSGSKEVVPLHSRKSSAASSSAVDLEENYFDFRKQCFVHSKEKGTFCKLSYPTKETFGYYLKCSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIAGRAMEETLSAKRDKNHVLFGGTKILQHTPDKSFPLKTPDGGCLAVILRTGFETSQGKLMRTILFSTERVTANSWESGFFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNGTTDLESDTSKVPVRTVEILASCHALVFVENKLVGDPLEKAALRGIDWSYKSDDKAVPKKGTGQPVQIVHRYHFASHLKRMAVVVRIQEEFFAFVKGAPEVIQDRLIDIPPSYVETYKKYTRQGSRVLALAYKSLDDMTVSEARSLDRDIVESRLTFAGFVVFNCPIRSDSATVLSELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGPTRNGEGYNWVSPDETENIHYSEKEVESLSETHDLCIGGDCIEMLQQTSAHLRVIPYVKVFARVAPEQKELIMTTFKTVGRLTLMCGDGTNDVGALKQAHVGIALLNALPPTQSGNSSSDSSKEEGSKSGKQKKSKPASEGTSKAKVASKSDSTSHSSGNRHQAAVEMQRQKLKKMMDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKHMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVVFFTVITSDLFRDLNDWLKLVPLPAGLRDKLLLWAFLMFLVCYSWERLLRWAFPGKIPAWKKRQRLAVSNLEKKQV* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1729 1180 Coils Coil 886 906 - -
Gso4g1729 1180 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1158 IPR023298 -
Gso4g1729 1180 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Gso4g1729 1180 Gene3D - 669 844 IPR023214 -
Gso4g1729 1180 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Gso4g1729 1180 MobiDBLite consensus disorder prediction 832 846 - -
Gso4g1729 1180 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Gso4g1729 1180 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1172 - -
Gso4g1729 1180 Pfam E1-E2 ATPase 258 468 - -
Gso4g1729 1180 SUPERFAMILY HAD-like 483 835 IPR036412 -
Gso4g1729 1180 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Gso4g1729 1180 MobiDBLite consensus disorder prediction 847 863 - -
Gso4g1729 1180 CDD P-type_ATPase_cation 170 1096 - -
Gso4g1729 1180 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Gso4g1729 1180 MobiDBLite consensus disorder prediction 832 891 - -
Gso4g1729 1180 Gene3D - 483 668 IPR023299 GO:0000166
Gso4g1729 1180 SFLD p-type atpase 469 944 IPR044492 -
Gso4g1729 1180 PANTHER CATION-TRANSPORTING ATPASE 1 1172 - -
Gso4g1729 1180 MobiDBLite consensus disorder prediction 865 888 - -
Gso4g1729 1180 SFLD Haloacid Dehalogenase 469 944 - -
Gso4g1729 1180 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Gso4g1729 1180 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Gso4g1729 1180 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Gso4g1729 1180 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Gso4g1729 1180 Gene3D - 226 388 - -
Gso4g1729 1180 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 43 1138 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Gso4g1729 1180 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 512 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso4g1729 1180 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 576 715 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1729 Gso-Chr4 47319122 47333800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1729 1 1179 Primary Pumps ATPases AT5G23630 77.918 0.0 1919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1729 K14950 - gmx:100807022 2312.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1729 4 47319122 47333800 Gso6g1359 6 13353078 13368341 GST