Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1706 ATGGATCCGGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGTACCGTCCTCCCACCCGCTCCGGCGCCGCCCCCGCGCCCGTCCCTCCTCGAATACGCGATGGCTCCCCCGCCGGTGACCACGGCGTTCCACCCTGCGAGGACGGCGGCTCCGCGCGAGCTCGGAGGACTGGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCGGCGAAGATCGCCGAGCTTGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTTTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGCCGCCGCGTCGAAGACGAAGACATCAAGCGCCGCAACAACAGCAACAACCTCCTCTCCACGGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGGGTTGTCAGAGGAGCCGGTGGTGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTGGCAGCGGAGGAGAGGAGTAAGCAGCAGAGGAGGCGGAGGACGAGGATGAAGACGAATCTTCATCACGATGAGAATGAGGAGCTTGAAGATGATGAAGGGGAAGAGAATGATGAAGGGAACATTAACAGAGGTGGTGGTTGTGAGAGGCAAAGAGAACACCCTTTCATCGTGACAGAACCTGGCGAAGTTGCACGTGGGAAGAAGAACGGTTTGGACTATCTGTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCAAGCTACATCAACAAGCCAAAGATGCGACACTACGTGCACTGCTACGCCTTACACTGTCTAGACGAGGAGGTCTCAAACGAGCTCCGAAGGGCGTTCAAGGAGAGAGGGGAGAACGTTGGGGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATTGCCGCGCGTCAAGGTTGGGACATTGATGCCATATTCAACGCACATCCTCGTCTTTCTATTTGGTATGTTCCGACAAAGCTTCGTCAGCTTTGTCACGCTGAGAGAAACAGTGTCTCGGCTTCAAGCTCCGTGTCTGCTGGCAGTGCTCACCTTCCCTTCTAA 1221 0.5815 MDPDAFTASLFKWDPRTVLPPAPAPPPRPSLLEYAMAPPPVTTAFHPARTAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDEDIKRRNNSNNLLSTDTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVVAAEERSKQQRRRRTRMKTNLHHDENEELEDDEGEENDEGNINRGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSVSASSSVSAGSAHLPF* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1706 406 MobiDBLite consensus disorder prediction 222 237 - -
Gso4g1706 406 Gene3D Protein LEAFY 229 398 IPR038276 -
Gso4g1706 406 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 228 392 IPR035209 GO:0003677
Gso4g1706 406 MobiDBLite consensus disorder prediction 157 237 - -
Gso4g1706 406 PANTHER PROTEIN LEAFY 1 406 IPR002910 GO:0003677|GO:0006355
Gso4g1706 406 Pfam Floricaula / Leafy protein SAM domain 55 131 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1706 Gso-Chr4 47083633 47086376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1706 1 390 Orphan Transcription Factor Family AT5G61850 66.584 4.47e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Gso4g1706 C_LFY_FLO 1.2e-108 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1706 - - gsj:114416001 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1706 4 47083633 47086376 Gso6g1385 6 13586776 13589952 GST