Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1705 ATGGAGGGAAGATCAATATCACATTCTTCTGAAAGAGAAGAGGAATATGGTTTGTTCCCAATATATTCTGAAAGGTCCCAGCAAGACATGTCAGCCATGGTTTCTGCTCTCACACAAGTCATTGGTGGCTCCAATAGTGATTCTCTTCATATGCATGAAGGCCTTTTAACTTCCTCACACAACAACACCTCAACCCAGAATACTAACGAACAATCCCAAGTACAACAACAAGAACAAGGGAGTGTAAGAAGAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCAAAGAAAGCAGCGAGGGTATGGCTTGGAACATTCGAAACTGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTCAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCTCACAAATCAGCACATGTCATCAAGCAGCACTAATTCTAACCCTGTTGCTCCACACTTGACTACTCAAGAAACTTATTCACCAAGTCACTTTCAATATGCTCAGCAACAATTCATGAGTGGTGGGAGTAACAGCTTCAGTAACCAAGATATGCTTCGTTTCTATGGGGGAGACAACATGTTTGTTTCTTCTCAGCAATCTGCATCTTCGTCTTCTTCTACTGCACTGTCTCAGCAGCAGCAAGAAGAGTTGCTGAAATTTTCGATGCAATTTGGAGGTTCTTCTCATTCTAATCATTCTGGGAATTGGAGGGGTGGACATTGA 789 0.4385 MEGRSISHSSEREEEYGLFPIYSERSQQDMSAMVSALTQVIGGSNSDSLHMHEGLLTSSHNNTSTQNTNEQSQVQQQEQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTASEFGYLTNQHMSSSSTNSNPVAPHLTTQETYSPSHFQYAQQQFMSGGSNSFSNQDMLRFYGGDNMFVSSQQSASSSSSTALSQQQQEELLKFSMQFGGSSHSNHSGNWRGGH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1705 262 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Gso4g1705 262 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Gso4g1705 262 MobiDBLite consensus disorder prediction 48 80 - -
Gso4g1705 262 PANTHER DNA-BINDING DOMAIN 21 248 IPR044808 GO:0003700|GO:0009873
Gso4g1705 262 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Gso4g1705 262 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Gso4g1705 262 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Gso4g1705 262 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Gso4g1705 262 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Gso4g1705 262 MobiDBLite consensus disorder prediction 48 89 - -
Gso4g1705 262 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Gso4g1705 262 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1705 Gso-Chr4 47072623 47075267 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1705 18 159 AP2-EREBP Transcription Factor Family AT5G61890 66.207 2.63e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g1705 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1705 - - gmx:100799190 391.734