Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1704 ATGAGGGCCCTTCTCCGGAATCACCTCTTGCATTTGTCACGTTCTCCAGCTCGCACGCTTCTTGTTCGGCTTCAAGCGTGCGAGCTGTCATCGTCATCTTCTTCTCCTCCTCATACCTCCCGAGAGGTTAGCGTTTCGGTGTGGTGGGATTTGATGAGCTGTCCGGTGCCTAATGACGTGAACCCTTTGAAGGCTGCGCCGGCAATCACGCAGGCCGTGAGGGCCAACGGGATCAAAGGTCCAATTGACATCAACGCTTTCGGGGATTTTAACTTCCTCTCCGAGCGCCTCCTGGACGCACTCGGTTCAAGCGACATTCCAGTCACCCACTTTCCTCGTGGTTCTTTTCTTCCCTTTCTCCTTTTTTCACCGTCCCATTTTAAAGCTTTTGACCGTTCCTTTGCTATAGGTCGAAAGAGTTATATCAACGTTGATATCATGTTTTGGGCATTCAACAATCCTCCACCTGCACATTTCTTTCTGATATCCAGTGATATAGGTTTTGCTGGCTTATTACACCGGTTAAACTTGAATAATTACTGTATCTTGCTTGCTGGCTCAAGGAATGCTCGTGTTCTCTCCATGGCAACAACTATAACGTGGCAATGGTATAAATTGCTTAGGGGAGAAAATCTTATTGCAAAACATTTCAACCATGCTCCAGATGGTCCATATGCTTCTTGGTATGGAAACTTTGGGGTGCCCCTTGAAAACCCATTCCCAGCCCCAGATTCCTTAAAAATGAGTTCTAAAGGCTCATCTGATGATGACATTGTTGGGTCTGAGGATGCGAGTCGTAAAAGTCAGGAAAGATATACAACTTCAATGAATCGCTCTGCTGGAAATGATCAGACAGCAGTGGACGACATTGGTACTGCAAACTATGAATCTGGAAAGCCTGAGTTGTTTTCTAGCAGTTCCTTTTGGAATGACATGGAATCTTTTATTTTCACCCTCAGAGGATCACTTATTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACGTAAATTACGGAAGAATGGACCCCCAGTTTTTAGATCTCTGTCTAAAAAAGATATCCTTCAATTGTTGGAGTTATTAATATCAGAGAAAAAGTGGTTGGAGGAAAGCCCCACCCAAACATTTCCTTTTCAGCTAAAACCAGTTCACAAGGACTCATTGGAATATTCAGAGAGGTCTAGATATGATATATTAGATGATTGTGATAGATTTGTACATGAGATATTGAGGGAACACCCAGATGGTTTTAAAATCAGTTCTTTTCCAAGATTTTTTGTTGCTAGGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTACCGAAAGTTAACAACCTTACTACAGATAATGACGGGAGTTAAAGTAGAGTCCAATTATATTTATAGATCCTACTAA 1398 0.4285 MRALLRNHLLHLSRSPARTLLVRLQACELSSSSSSPPHTSREVSVSVWWDLMSCPVPNDVNPLKAAPAITQAVRANGIKGPIDINAFGDFNFLSERLLDALGSSDIPVTHFPRGSFLPFLLFSPSHFKAFDRSFAIGRKSYINVDIMFWAFNNPPPAHFFLISSDIGFAGLLHRLNLNNYCILLAGSRNARVLSMATTITWQWYKLLRGENLIAKHFNHAPDGPYASWYGNFGVPLENPFPAPDSLKMSSKGSSDDDIVGSEDASRKSQERYTTSMNRSAGNDQTAVDDIGTANYESGKPELFSSSSFWNDMESFIFTLRGSLIVSQSKNREDMARKLRKNGPPVFRSLSKKDILQLLELLISEKKWLEESPTQTFPFQLKPVHKDSLEYSERSRYDILDDCDRFVHEILREHPDGFKISSFPRFFVARYGYHLDLQKLGYRKLTTLLQIMTGVKVESNYIYRSY* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1704 465 Pfam NYN domain 45 186 IPR021139 GO:0004540
Gso4g1704 465 CDD LOTUS 399 456 - -
Gso4g1704 465 PANTHER EMB|CAB71880.1 289 464 - -
Gso4g1704 465 PANTHER EMB|CAB71880.1 9 247 - -
Gso4g1704 465 MobiDBLite consensus disorder prediction 243 286 - -
Gso4g1704 465 MobiDBLite consensus disorder prediction 270 286 - -
Gso4g1704 465 Pfam OST-HTH Associated domain 330 377 IPR025677 -
Gso4g1704 465 PANTHER LIMKAIN B LKAP 9 247 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso4g1704 465 PANTHER LIMKAIN B LKAP 289 464 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso4g1704 465 Pfam OST-HTH/LOTUS domain 399 457 IPR025605 -
Gso4g1704 465 Gene3D - 393 461 IPR041966 -
Gso4g1704 465 ProSiteProfiles OST-type HTH domain profile. 398 465 IPR025605 -
Gso4g1704 465 CDD PIN_limkain_b1_N_like 45 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1704 Gso-Chr4 47068486 47071411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1704 45 209 C2H2 Transcription Factor Family AT5G61190 32.530 2.30e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1704 - - gsj:114410891 920.228