Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1702 ATGACATCGGATGGAATTGGGAGTGTAAGAAAAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCAAAGAAAGCAGCGAGGGTATGGCTTGGAACATTCGAAACTGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTATCAGATTCAAAGGAAGCAAAGCAAAGCTTAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCTCACAAATCAGTACATGTCATCAAGCAGCACTAATTCTAACCCTATTGCTCCACACTTGACTACTCAAGAAACTTATTCACCAAGTCACTTTCAATATGCACAACAACAATTCATGAGTGGTGGGAGTAACAGCTTCAGTAACCAAGATATGCTTCGGTTCTATGGGGGAGACAACATGTTTGTTTCTTCTCAGCAGTCTGCATCTTCGTCTTCTTCTACTGCACTGTCTCAGCAGCAGCAAGAAGAGTTGCTGAAATTTTCGATGCAATTTGGAGGTTCTTCTCATTCTAATCATTCTGGGAATTGGAGGGGTGGACATTGA 570 0.4421 MTSDGIGSVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAAIRFKGSKAKLNFPERVQGTASEFGYLTNQYMSSSSTNSNPIAPHLTTQETYSPSHFQYAQQQFMSGGSNSFSNQDMLRFYGGDNMFVSSQQSASSSSSTALSQQQQEELLKFSMQFGGSSHSNHSGNWRGGH* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1702 189 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Gso4g1702 189 PANTHER DNA-BINDING DOMAIN 11 175 IPR044808 GO:0003700|GO:0009873
Gso4g1702 189 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Gso4g1702 189 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Gso4g1702 189 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Gso4g1702 189 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Gso4g1702 189 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Gso4g1702 189 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Gso4g1702 189 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 175 - -
Gso4g1702 189 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1702 Gso-Chr4 47064904 47066126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1702 7 86 AP2-EREBP Transcription Factor Family AT5G61890 81.250 2.46e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g1702 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1702 - - gsj:114410889 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1702 4 47064904 47066126 Gso6g1386 6 13598311 13601143 GST
Gso5g1703 5 40285849 40289432 Gso4g1702 4 47064904 47066126 PCT
Gso4g1702 4 47064904 47066126 Gso5g1703 5 40285849 40289432 PCT