Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1697 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTTTCTGCCTCATCTCGCTTTTTGGATGACATTTCCTATGTTTCTGAGAAGAATACAGGATTACGGAAGCCAAAATTTATTCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCTGCATCACCTGGCATCATTTTTAATACTTCGTCACCCCATGAAACCAATGCAAAAACAGGCTTGTTAATGTCTCAAACTACTCTATCTCGTGAAATTACAGAAGACCTACATTTTGGCAGAGAAGCAGGCAATATAGAGATGCTGAAGGATTCTACCACAGAATCATTGAATTATCACAAGAGATCATGGTCTAATGTGCATCGGCAGCCAGCATCTAGCTCATATGGTTTAGTTGGGAGCAAGATTGTCACCAGTGCTGCCTCACGGGAAAGCAGTCTATTTTCAAGCTCACTGTCTGACATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTCGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCAATGATGAGTTAGGATGCAGTACTCGCACTAGAATGAATGATGATTTTGAAGATTTTGACTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGAAAAAGAACCAGTTGCGGGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGGGCAATTCTCCAGAGAAGGATATTGGCCATGGTACACTGATGATATCCAATCTTGATTCATCTGTTTTGGATGATGAACTAAAACAGATTTTTGGGTTTTATGGAGAAATTAGAGAAATCTATGAATATCCACAATTGAATCATGTCAAATTTATTGAATTTTATGATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTAAACGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCTGGTCTTCCCAAGATTGCAACATGTATGATGCATCAGTCACACAAAGGAAAAGATGAACCTGATGTTGGTCATAGTCTGAGTGACAACATATCCTTAAGACATAAAGCAGGAGTGTCATCTGGATTTATTGCATCTGGTAGCGGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCAACACAGCTACCTGCTTTTATTGATAACTCACCGTTTCATGTGAATTCTAGCATTCACAAGATCACAAGAGGGGCATCTGCGGGAAAAGTATCTGGTGTTTTTGAGGCCTGTAATGCTTTTGATGCTATGAAATTTGCATCCATTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGTGAAAGTTTAGCTACTGGCAGTCCTTACAACTTTTCAAGTACCATTAACACGGCTTCCAATATTGGAACTGGATCGACGGAATCATCTGAAAGCAGGCACATTCAGGGAATGAGTTCAACTGGGAACCTAGCTGAGTTTAATGCAGGAGGAAACGGAAACCACCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTTCTTCAAATGCCATGCTTTGGCAAAAAACACCATCCTTTGTTAATGGTGCATGTTCTCCAGGTCTTCCACAGATACCCAGCTTTCCTAGAACACCACCTCATGTTCTTAGAGCATCACATATAGACCACCAAGTGGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGATAGACAACATTCTTTCTTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTGGGTTCTGTTGGAAGTCCAGGCTTTAATGGTAGCTGGCAGTTGCATCCTCCTGCTTCTCACAATATGTTTCCTCATGTTGGTGGGAATGGTACAGAATTGACGTCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTCCCTGGGAAACTTCCCATGACTTTGGTTTCTAAATTTGATACTACCAATGAACGAATGAGAAACCTCTATTCTCATAGAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATTTTACGTGGGGATGACAACCGGACAACACTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAGGCTTTTCATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCCTATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGGTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAAATTCGCATTAATGGTAATGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCCGGGAATGCAATAGAATCTACATCGAGCTCTTCAAAAAATTCTGACTGA 2916 0.4084 MPSEIMEKRGVSASSRFLDDISYVSEKNTGLRKPKFIHDHFLQGKSEMAASPGIIFNTSSPHETNAKTGLLMSQTTLSREITEDLHFGREAGNIEMLKDSTTESLNYHKRSWSNVHRQPASSSYGLVGSKIVTSAASRESSLFSSSLSDMFSQKLRLLGNGVLSGQPITVGSLPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVNDELGCSTRTRMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSCGDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKGNSPEKDIGHGTLMISNLDSSVLDDELKQIFGFYGEIREIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMMHQSHKGKDEPDVGHSLSDNISLRHKAGVSSGFIASGSGLENGYNQGFHSATQLPAFIDNSPFHVNSSIHKITRGASAGKVSGVFEACNAFDAMKFASISRFHPHSLPEYRESLATGSPYNFSSTINTASNIGTGSTESSESRHIQGMSSTGNLAEFNAGGNGNHPHHGLYHMWNGSNLHQQPSSNAMLWQKTPSFVNGACSPGLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWDRQHSFLGESPDASGFRLGSVGSPGFNGSWQLHPPASHNMFPHVGGNGTELTSNAGQGSPKQLSHVFPGKLPMTLVSKFDTTNERMRNLYSHRSEPNTNNNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKIRINGNEENRSQGNPSSLASGEESGNAIESTSSSSKNSD* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1697 971 MobiDBLite consensus disorder prediction 565 597 - -
Gso4g1697 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Gso4g1697 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Gso4g1697 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 971 - -
Gso4g1697 971 SMART rrm1_1 272 340 IPR000504 GO:0003723
Gso4g1697 971 SMART rrm1_1 357 425 IPR000504 GO:0003723
Gso4g1697 971 SMART rrm1_1 797 875 IPR000504 GO:0003723
Gso4g1697 971 Pfam RNA recognition motif 2 795 891 IPR007201 -
Gso4g1697 971 Gene3D - 354 448 IPR012677 -
Gso4g1697 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Gso4g1697 971 CDD RRM1_MEI2_like 270 345 IPR034453 -
Gso4g1697 971 MobiDBLite consensus disorder prediction 565 593 - -
Gso4g1697 971 MobiDBLite consensus disorder prediction 937 971 - -
Gso4g1697 971 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 971 - -
Gso4g1697 971 SUPERFAMILY RNA-binding domain, RBD 268 428 IPR035979 GO:0003676
Gso4g1697 971 MobiDBLite consensus disorder prediction 907 971 - -
Gso4g1697 971 CDD RRM3_MEI2_like 798 883 IPR034454 -
Gso4g1697 971 Gene3D - 265 353 IPR012677 -
Gso4g1697 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Gso4g1697 971 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1697 Gso-Chr4 47003243 47011962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1697 266 422 Eukaryotic Initiation Factors Gene Family AT3G16380 26.404 4.01e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1697 - - gmx:100797616 1934.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1697 4 47003243 47011962 Gso6g1389 6 13654625 13663313 GST
Gso8g0063 8 596855 605250 Gso4g1697 4 47003243 47011962 PCT
Gso4g1697 4 47003243 47011962 Gso8g0063 8 596855 605250 PCT