Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso4g1694 | ATGACCAAATTTTCTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCCCAGGCAGAGCATATGCTGAATGACCGGTTACTAAACATGCTAAACGTCGATATCCTAGATGTCAAGGAAGCTAGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTATCGTAGAAGAGGATTTGCACAATGCAAGATCCTCATTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGATTTGATTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAGCTATTACAAGAGATGGAGCCTTTCATTATCGAGGTATTGGCTTATACACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAAATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCCTTGAATGGTCCTTATGGTTCTCCTTGTAGAGATGGTCCAGTGCATCCTTTTTCTAGGATATCAGATAAAGTGGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGGTCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGTAAACCATGGAGTGGATTAAACAGTGGCAATCAATCATCTTTACACAGAAACTGTGCCACTGAAAATAGTGCTGGAATTTTGAGTCGCCTCCTTTCTTCACATTACCATGGACTTATCCCTGATGAAAAATCTGTAGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTGTCAGATGACTCAGAAAGCGGTGACAGCTACTCTGCCAACAAGACTTATTTGTTAAAAGGTTCTCCAGATGATGATCATGCAGTGAGTGGGGATTCTATAAAAAATGAAAAGCCAATTGATATTCTTAGAAAGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCTGCAGTGTTAACCATGTTTCAGTGCTTGGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGCATTCGACAAGTACATCACAGACTGATGACACTCCTGATGGTTCATCCAAGACACACAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATGCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCAGCAAAAGTCTTTGTTCGCCGGATAACAAATAACAACCGTCTCCTTTCAACGGCACAGCAGGTGGTGGAAAGCATCAGTGCCAATGACAAGAAAGCAGTGTACAGGCACATTGTGAAGTCAGAAGTGAATCTCAATGCTATTATTAGTGGGAAAGCAGGCTTTTCTTCCAACACGCCTTCTTCAATTAATCCAAACATATCATGTGAAAGTAAGACTCCACAAGTAGAGGATATACAAGATGGTTCTAGTGTGCTTCACCTGGCATGCATAATTAGTGATTCTGCAATGGTAGAGCTGCTCCTACAGTATGGTGCAGACATAAATGCTATTGATTCTAGAGGGAGGACACCTCTACATTACAGCACTATGAGAGGGAAGAATGCAACTGCAAGAGTGCTTATTACAAGGGGGGCCAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCCTGCAACGGAACCTGACACTGCAGGCAAAGAAACTCTTGCTCTAAACCAGCAAATCGCATGCCCTCAAAACTTAATAGAAAAATGA | 2127 | 0.4095 | MTKFSIALREISTYKELLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVHDQAREKFMSLRKSTRMDIATIVEEDLHNARSSFEEARFNLVSALHNVEAKKRFDFLEAVTGVMDAHLRYYRQGYQLLQEMEPFIIEVLAYTQKARESYNEEQISLCERMLEYKKHVHHESMLSLNGPYGSPCRDGPVHPFSRISDKVADAVTESAENGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWSGLNSGNQSSLHRNCATENSAGILSRLLSSHYHGLIPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAENALDQMDWMEKITGVIATLLSAQTLSDDSESGDSYSANKTYLLKGSPDDDHAVSGDSIKNEKPIDILRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLTMFQCLGNLFANSVWEELLHSTSTSQTDDTPDGSSKTHKKLFHARKPAHDDAISLKERFIHAKYAAKVFVRRITNNNRLLSTAQQVVESISANDKKAVYRHIVKSEVNLNAIISGKAGFSSNTPSSINPNISCESKTPQVEDIQDGSSVLHLACIISDSAMVELLLQYGADINAIDSRGRTPLHYSTMRGKNATARVLITRGANPLAVDKEGNTPFKPATEPDTAGKETLALNQQIACPQNLIEK* | 709 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso4g1694 | 708 | SUPERFAMILY | PH domain-like | 217 | 366 | - | - | |
| Gso4g1694 | 708 | ProSiteProfiles | Ankyrin repeat region circular profile. | 608 | 639 | - | - | |
| Gso4g1694 | 708 | Pfam | Ankyrin repeats (many copies) | 610 | 655 | IPR002110 | GO:0005515 | |
| Gso4g1694 | 708 | CDD | ArfGap | 399 | 527 | - | - | |
| Gso4g1694 | 708 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 395 | 535 | IPR037278 | - | |
| Gso4g1694 | 708 | Gene3D | - | 591 | 697 | IPR036770 | - | |
| Gso4g1694 | 708 | MobiDBLite | consensus disorder prediction | 485 | 504 | - | - | |
| Gso4g1694 | 708 | Gene3D | Arf GTPase activating protein | 382 | 540 | IPR038508 | - | |
| Gso4g1694 | 708 | Pfam | Putative GTPase activating protein for Arf | 399 | 533 | IPR001164 | GO:0005096 | |
| Gso4g1694 | 708 | SMART | PH_update | 217 | 354 | IPR001849 | - | |
| Gso4g1694 | 708 | Pfam | PH domain | 218 | 351 | IPR001849 | - | |
| Gso4g1694 | 708 | ProSiteProfiles | PH domain profile. | 216 | 352 | IPR001849 | - | |
| Gso4g1694 | 708 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 396 | 540 | IPR001164 | GO:0005096 | |
| Gso4g1694 | 708 | Coils | Coil | 41 | 61 | - | - | |
| Gso4g1694 | 708 | ProSiteProfiles | Ankyrin repeat region circular profile. | 641 | 667 | - | - | |
| Gso4g1694 | 708 | PRINTS | HIV Rev interacting protein signature | 408 | 427 | IPR001164 | GO:0005096 | |
| Gso4g1694 | 708 | PRINTS | HIV Rev interacting protein signature | 427 | 444 | IPR001164 | GO:0005096 | |
| Gso4g1694 | 708 | PRINTS | HIV Rev interacting protein signature | 450 | 471 | IPR001164 | GO:0005096 | |
| Gso4g1694 | 708 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 | 1 | 698 | - | - | |
| Gso4g1694 | 708 | PANTHER | CENTAURIN/ARF | 1 | 698 | IPR045258 | GO:0005096 | |
| Gso4g1694 | 708 | SUPERFAMILY | Ankyrin repeat | 607 | 683 | IPR036770 | - | |
| Gso4g1694 | 708 | Pfam | BAR domain of APPL family | 1 | 156 | - | - | |
| Gso4g1694 | 708 | ProSiteProfiles | Ankyrin repeat profile. | 608 | 640 | IPR002110 | GO:0005515 | |
| Gso4g1694 | 708 | CDD | PH_ACAP | 219 | 356 | - | - | |
| Gso4g1694 | 708 | Gene3D | Arfaptin homology (AH) domain/BAR domain | 1 | 173 | IPR027267 | - | |
| Gso4g1694 | 708 | SMART | arf_gap_3 | 396 | 540 | IPR001164 | GO:0005096 | |
| Gso4g1694 | 708 | SMART | ANK_2a | 608 | 637 | IPR002110 | GO:0005515 | |
| Gso4g1694 | 708 | SMART | ANK_2a | 641 | 670 | IPR002110 | GO:0005515 | |
| Gso4g1694 | 708 | Gene3D | - | 208 | 368 | IPR011993 | - | |
| Gso4g1694 | 708 | ProSiteProfiles | Ankyrin repeat profile. | 641 | 673 | IPR002110 | GO:0005515 | |
| Gso4g1694 | 708 | SUPERFAMILY | BAR/IMD domain-like | 1 | 239 | IPR027267 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso4g1694 | Gso-Chr4 | 46948340 | 46954717 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso4g1694 | 400 | 538 | C2H2 Transcription Factor Family | AT4G21160 | 42.657 | 5.22e-24 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso4g1694 | K12489 | - | gmx:100797073 | 1380.16 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso5g1708 | 5 | 40333046 | 40347039 | Gso4g1694 | 4 | 46948340 | 46954717 | PCT | |
| Gso8g0067 | 8 | 632053 | 634666 | Gso4g1694 | 4 | 46948340 | 46954717 | PCT | |
| Gso4g1694 | 4 | 46948340 | 46954717 | Gso5g1708 | 5 | 40333046 | 40347039 | PCT | |
| Gso4g1694 | 4 | 46948340 | 46954717 | Gso8g0067 | 8 | 632053 | 634666 | PCT |