Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1692 ATGACATCATTGGAGGTGACGATGAAGGGAAATTGCTTGAACCACAACGACGGCGGAGCCACGGAGCCTCATTCCCCGTCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAGCTATGGCATGCTTGTGCAGGTCCTCTAGTCACGGTTCCGCGAGAAAGAGAGCGCGTGTTTTATTTCCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAACCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTTGCTCAGGTGACTTTGCTTCCGGAGCCAAATCAAGATGAGAATGCCGTGGAGAAGGAGCCACCACCGCCTCCTCCGCCGCGGTTTCATGTTCATTCTTTCTGTAAAACTCTGACGGCGTCCGATACCAGTACCCATGGTGGGTTTTCTGTGCTGAGACGGCATGCTGATGAATGTCTTCCTCCTCTGGATATGTCGAAGCAGCCACCCACACAGGAATTGGTGGCTAAGGATCTTCATGCAAATGAATGGCGATTTAAACATATCTTCCGAGGTCAACCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAAAGGCTTGTCGCTGGGGATGCATTTATATTTCTTAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTCCGACGAGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTTATCTCCAGCCACAGCATGCATCTCGGTGTCCTTGCAACTGCTTGGCATGCCATCTCGACCGGGACCATCTTCACTGTTTATTACAAGCCTAGGACCAGTCCTGCTGAATTTATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAATAATTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATTCTGATCCCAAAAGGTGGAGAGATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCCAACACCCCTCGGCCAGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCCCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGTGAGCATAGACCCTTCACCGGCAAATGGCTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCTGAAAGTAATGAGTCTGATACTGCTGAGAAGTCTGTTGTTTGGCCACCTGCTGCAGTAGATGATGAAAAGATGGATGTTTCTACTTCAAGGAGGTATGGTTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACATATTCGGATCTTCTTTCAGGCTTTGGGGCCAGTGGGGATCCTTCTCATTTATCCTTGAAGGATCAAATGAGCCCTGCTTATTCTGCTAGAAAGCAATCATTGGATCATGAAGGCAAACTTCACATGCCTCATCCATGGCCTGTAATGCCCTCTAGTCTGTCACTGAGCATCTTGGACTCTAATACAAAAGGTCCTGCACATGGTGGTGATACAACTTACAAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCACTCCATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCACCCCCACCTGCACTCCTAACTCAATATCAGAGTCCTTGTTCAAGAGAGCTTATGTCAAAACAAGTGTCAGCAAAAACTTGTGAGGCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTACTTTACCAGAGCCTTCTTTATCACAAAGAAATGTGAGTGAGGCTGCTGATCAGATGCATCTTACAGCACACCAACAAAGAACATCTGAAAATGATGAAAAGTTAGACCACTCGAAGGGATCAAGACCTGTAGATGATATAGTTGTTGATGACCAGGACAGACCATTACGGACTTCTCAGCTGCATACTAAAGATGTTCAAGCTAAACCTCTCAGTGGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGATCAGTGGACCTTACAAAGTACAGTGGCTATGATGAATTAGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTATTGTCAACTAAAAAAGATTGGCTTATCGTCTTTACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTATATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCAGGTACCTTGAGCTCGAAAAATGAAGAGAATCATTCGGTGACGGCTAGTGAAGGTGCAGATACAAAAGATGTTAAATGTCAGCCGCATCAAAAGTTCAATTCAGAAAATGGTCTTGACGCCTAA 2532 0.468 MTSLEVTMKGNCLNHNDGGATEPHSPSTAKDAEAALFRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRDSKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAAVDDEKMDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHLSLKDQMSPAYSARKQSLDHEGKLHMPHPWPVMPSSLSLSILDSNTKGPAHGGDTTYKARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPALLTQYQSPCSRELMSKQVSAKTCEAVKPKDGDCKLFGFSLISGPTLPEPSLSQRNVSEAADQMHLTAHQQRTSENDEKLDHSKGSRPVDDIVVDDQDRPLRTSQLHTKDVQAKPLSGSARSCTKVHKKGIALGRSVDLTKYSGYDELVAELDQLFEFGGELLSTKKDWLIVFTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENHSVTASEGADTKDVKCQPHQKFNSENGLDA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1692 843 MobiDBLite consensus disorder prediction 816 832 - -
Gso4g1692 843 MobiDBLite consensus disorder prediction 376 423 - -
Gso4g1692 843 SMART B3_2 142 244 IPR003340 GO:0003677
Gso4g1692 843 MobiDBLite consensus disorder prediction 663 689 - -
Gso4g1692 843 Gene3D - 305 375 - -
Gso4g1692 843 MobiDBLite consensus disorder prediction 657 689 - -
Gso4g1692 843 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Gso4g1692 843 ProSiteProfiles PB1 domain profile. 713 795 IPR000270 GO:0005515
Gso4g1692 843 MobiDBLite consensus disorder prediction 394 416 - -
Gso4g1692 843 SUPERFAMILY CAD & PB1 domains 716 790 - -
Gso4g1692 843 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Gso4g1692 843 Gene3D - 709 802 - -
Gso4g1692 843 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso4g1692 843 Gene3D - 139 244 IPR015300 -
Gso4g1692 843 CDD B3_DNA 140 242 IPR003340 GO:0003677
Gso4g1692 843 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Gso4g1692 843 MobiDBLite consensus disorder prediction 802 843 - -
Gso4g1692 843 Pfam AUX/IAA family 754 800 IPR033389 -
Gso4g1692 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 820 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso4g1692 843 MobiDBLite consensus disorder prediction 1 29 - -
Gso4g1692 843 PANTHER AUXIN RESPONSE FACTOR 2 16 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1692 Gso-Chr4 46911414 46916318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1692 1 828 B3 DNA Binding Superfamily AT5G62000 64.890 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso4g1692 B3 2.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1692 - - gmx:100797082 1712.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1692 4 46911414 46916318 Gso6g1394 6 13744254 13749147 GST
Gso5g1709 5 40367291 40372082 Gso4g1692 4 46911414 46916318 PCT
Gso8g0068 8 654367 659176 Gso4g1692 4 46911414 46916318 PCT
Gso4g1692 4 46911414 46916318 Gso5g0398 5 4203303 4205899 PCT
Gso4g1692 4 46911414 46916318 Gso17g1095 17 10411308 10413922 PCT