Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1691 ATGATGTCGAGAATAAACAACAGCCTTGTCTGGATGGACGAACGAGAAGCCGAAAACACTGCCTCCGCTTCCTGGGCCAGAAACTCCAAGCCTAACAACAACATCATCATTGCCACCGGCACAACCACAACCACAGGTTTCGTCGAAACCTCTAACGACTTAGGTTCTCTCTGCGCCTTCAAGCCCATGCTCGATGTTGACGACGAATGGTACAACAACATCACCAACCACCACCACCACCAAGATATTGCCTTCGACCCCGACAACCTCTTACTCCACCCCTCCGCCGTGGACTCCTCCTCCTCCTGCTCCCCCTCTCACCTCCAGTTCTTCCTCCCTCCCAACCCCAAACTCAACCCCTTCGATATGGGCTTTCTTGACCCTCAAGCTTCTTCTTCCTTACCCCTTCTCGCCTCCGAAACAACACACTTCACACCCCCTCAGACCAGCACCACCACCGCTTTCGCCGGCTTCCAGAGCCTCCAAGAGGGTTCCTCCAATCCTCTCTTTCTCAACCGTTCCAACATTCTGAGACCTCTCGAGTCGCTGCCCCCCTCCGGGGCCCAACCCACCCTTTTCCAGAAGAGAGCCGCGCTCAGGAAGAACATGAACATGAGTGACAATAAGAAGAGGAAGGAGAAGGATGAGGTGGTGGTTGAGGATGTGAGTTTCGACGGGTCTGGCTTGAACTACGATTCTGATGACTTAACTGAGAGTAATTATAATGACGCTAAGGAGAAGAATGGTGGTGGGGGGGTTAGTTCCAATGCCAACAGCACCGTCACCGGTTTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCCGAACGACGCCGCCGGAAGAAGCTCAATGACAGACTCTACATGCTGAGGTCCGTTGTTCCCAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGATCTGCATAACGAATTGGAGTCGACGCCGGTGGGTTCTTCGCTCACTCCAGTCTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACGCTGCCGTGCCGAATCAAGGAAGAACTGTGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCTAGGGTTGAGGTTCGGCTGCGTGAAGGAAGGGCAGTTAACATACACATGTTTTGTGGCCGCAAACCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTGCATCCGGAGCAAATCAAAGCAGTACTCTTAGATTCAGCTGGCTACAATGGCATGATGTAA 1392 0.5158 MMSRINNSLVWMDEREAENTASASWARNSKPNNNIIIATGTTTTTGFVETSNDLGSLCAFKPMLDVDDEWYNNITNHHHHQDIAFDPDNLLLHPSAVDSSSSCSPSHLQFFLPPNPKLNPFDMGFLDPQASSSLPLLASETTHFTPPQTSTTTAFAGFQSLQEGSSNPLFLNRSNILRPLESLPPSGAQPTLFQKRAALRKNMNMSDNKKRKEKDEVVVEDVSFDGSGLNYDSDDLTESNYNDAKEKNGGGGVSSNANSTVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPVGSSLTPVSSFHPLTPTPPTLPCRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCGRKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1691 463 MobiDBLite consensus disorder prediction 249 265 - -
Gso4g1691 463 CDD bHLH_AtAMS_like 275 340 - -
Gso4g1691 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Gso4g1691 463 Coils Coil 311 335 - -
Gso4g1691 463 Pfam Helix-loop-helix DNA-binding domain 279 321 IPR011598 GO:0046983
Gso4g1691 463 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 127 463 - -
Gso4g1691 463 SMART finulus 278 327 IPR011598 GO:0046983
Gso4g1691 463 MobiDBLite consensus disorder prediction 229 273 - -
Gso4g1691 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983
Gso4g1691 463 CDD ACT_UUR-ACR-like 392 452 - -
Gso4g1691 463 PANTHER BHLH TRANSCRIPTIONAL FACTOR 127 463 - -
Gso4g1691 463 Gene3D - 266 335 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1691 Gso-Chr4 46906740 46910862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1691 60 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.783 1.87e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g1691 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1691 - - gmx:100217332 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1691 4 46906740 46910862 Gso6g1395 6 13749680 13753953 GST
Gso5g1710 5 40372875 40377372 Gso4g1691 4 46906740 46910862 PCT
Gso4g1691 4 46906740 46910862 Gso5g1710 5 40372875 40377372 PCT