Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1685 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTTGTTGACCCTGCATTCTTCCCCAACAACTTAAACACCCCTTCCCCTCCTCCTCATCAGTTTCAACAACTCCCTCATGAAACATCATCTTTTAATGTCACAAACCAGGAGACTAGCTGTGTTGATCAGAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACTGAAAACCTTAGCCCTCAGTCCTCCATGGTAGTGGACAAGCTTGAAACTGGGGAGCAGGTCACTCAGAAGGTGAACACTCCTGTGGAGAAGAAAAGGAAAACCAGAAATGGATCTTCCTTGACTAGTAACCCCCAATCCAAGGATGCTGCAACAGAAAGGAAAAACAAGAAACAAAGGAAGGGCAATGGTGGGTTGAAAGAAGAGGACAAGGCAAAAGAAGAGAAGAAGGAACAGAGAAAGTGTCCCGAAGAGCCTCCAACAGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGACAAGGTGACTGGAAAGGCCCTTATGTTGGACGAAATAATCAATTATGTTCAATCTCTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCAGTGAATCCCATGTTTTATGACTTGGCAACGGATCTAGACACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCACCACTACCATCTGTGTCACATTGCAACAGCCCTAACAACCAAGCCACTACTTTTGCTGATACAACCACCATGACCCCCACCAACATCTTCCACATTGCTAGTGACTATCTTTTGGATAATTCAGTCTCATTTTTTCTTCAAGGGCAGAGGTCAAATGTGTTCTCTGAGGAGGATACTGGTAGTCATTTCTGGGACGCAGAGGACCAGCGGCAAAAGTTTCTTCATCCATGTGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1041 0.4505 MAAFSYQYHPFLVDPAFFPNNLNTPSPPPHQFQQLPHETSSFNVTNQETSCVDQSSKITISDNEPSVTENLSPQSSMVVDKLETGEQVTQKVNTPVEKKRKTRNGSSLTSNPQSKDAATERKNKKQRKGNGGLKEEDKAKEEKKEQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLATDLDTLLVRPEKLNSMASPSPPLPSVSHCNSPNNQATTFADTTTMTPTNIFHIASDYLLDNSVSFFLQGQRSNVFSEEDTGSHFWDAEDQRQKFLHPCGFSNNLCSFH* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1685 346 Gene3D - 163 236 IPR036638 GO:0046983
Gso4g1685 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Gso4g1685 346 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Gso4g1685 346 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 346 IPR024097 GO:0006355
Gso4g1685 346 MobiDBLite consensus disorder prediction 117 174 - -
Gso4g1685 346 CDD bHLH_AtBPE_like 156 241 - -
Gso4g1685 346 MobiDBLite consensus disorder prediction 54 92 - -
Gso4g1685 346 SMART finulus 172 222 IPR011598 GO:0046983
Gso4g1685 346 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 346 - -
Gso4g1685 346 MobiDBLite consensus disorder prediction 54 174 - -
Gso4g1685 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1685 Gso-Chr4 46811182 46814140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1685 1 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.652 8.76e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g1685 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1685 - - gmx:100796018 665.611