Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1682 ATGAACAAAAGACTCTCTTTTCTCTCCCACAACGAAAAATCAAAGATGAAAGATTCAACAGAAACAGATGCTATCAGCGATTCCCTTGAGCTTCTGAGTACCTTTCTGGACTCGGAGCTCCCAAGCGTGAGAAACTTCAAAGGGAAATGGTCACTCGCCCGAGTCAAACTCACCCAACTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTCCCCAACGCCTCCACCACAAACCCCCTCTCCCTCCACCTCCTCCACTCAATCTTCAAAACCCTAAACGACGCCGTTTCGCTCTCCCGCTCATGCCAACCCCAAACCCTCCCAAACGGAAAACTCAAAACCCAAAGCGACCTCGACTCCCTCCTCGCCACCCTCGACCGCCACGTCAGCGACTGCGACATTCTCTTCCGCAGCGGCCTCCTCCTCGAAAACGACGCCGTTTCCGTTTCCGTTTCCGTTTCATCGAAACGCGAAGCCATCCGCTCCGAATCACGTAACCTAATAACCCGTCTTCAAATCGGGTCGCCCGAGTCCAAAGCCTCCGCCATGGACTCCTTACTGGGCCTTCTCCAAGAGGACGACAAAAACGTGACCATCGCGGTGGCCCAGGGAGTCGTTCCCGTGCTCGTGCGCCTACTCGATTCCCCCCCCTCCGACACAAAAGAGAAAACCGTCGCTGCCATCTCAAAAGTCTCCACCGTGGAAAGCGCGAAGAGCGTGCTTCTCGCGGAGGGCTTGCTCCTTCTCAACCACTTGCTTAGGGTTTTAGATTCCGGAAGCGGGTTCGCTATTGAGAAAGCATGCATCGCGCTTCGGGCGCTGAGTTTGACGAAGGAGAACGCTAGGGCGATTGGCTCTCGCGGCGGAATCTCGTCGCTTTTGGAGATTTGCCAGGCTGGCACCCCTGGTGCACAGGCTTCTGCCGCCGCCGTGCTGCGCAACCTCGCCGCGTTTGAGGAAATTAGAGATAATTTTGTTGAGGAGAACGCGGTGGTGGTTCTGATTGCGTTGGCCTCCTCCGGAACCGCGGTGGCGCGTGAAAACGCGGTCGGGTGTTTGTCTAATTTGATTAATTCGGATTCTTCGTCGGAGGAGACCGAGGGTTTGTCGAATTTGAGGATTACGGTGGTGAAAGAAGGTGGTGTTGAGTGTTTGAAGAATTACTGGGATTCAGGGACTCAAATTCAGAGTCTTGAAGTTGCGGTTGTAATGTTGAGACATTTGGCTGAAAGTGGTCCAATTGGTGAAGTTCTTGTTGGTGAAGGTTTTGTTCAGAGGCTTGTTGGGGTGCTGAATCGTGAGGTTTTGGCGGTTCGGATTGCGGCGGCGAGGGCGGTTTACGCGTTGGGATTGAACAGTGGGAGGGCGAGGAAGGAGATGGGGGAATTGGGGTGCGTTTTAGGTTTGATTAAAATGTTAGATGGGAAGGGTGTGGAGGAAAAAGAAGCTTCTGCAATGGCATTGTCGGTGCTGCTGATGCACCCGGCGAATCGGAGGGTTTTCCGCAAGGACGAAAGAGGGGTTGTGAGTGCAGTTCATCTCTTGAACCCTTCGTTGCAGGGGTTGGATAAGAAGTACCCTGTTTCGTTGCTCGCTTTGCTTGTTCATTCCAAGAGTTGCAGGAAGCAAATGGTGGCTGCTGGAGCCTGTGTATATACGCAGAAGCTTGTTGAGATGGATGTTCCCGGGTCGAAGAAATTCTTGGAGAGCCTCGGGCGTGGTAAGATTTGGGGTGTTTTTGCTAGGCCCTAG 1752 0.5342 MNKRLSFLSHNEKSKMKDSTETDAISDSLELLSTFLDSELPSVRNFKGKWSLARVKLTQLQTHLTDFSAEFPNASTTNPLSLHLLHSIFKTLNDAVSLSRSCQPQTLPNGKLKTQSDLDSLLATLDRHVSDCDILFRSGLLLENDAVSVSVSVSSKREAIRSESRNLITRLQIGSPESKASAMDSLLGLLQEDDKNVTIAVAQGVVPVLVRLLDSPPSDTKEKTVAAISKVSTVESAKSVLLAEGLLLLNHLLRVLDSGSGFAIEKACIALRALSLTKENARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFEEIRDNFVEENAVVVLIALASSGTAVARENAVGCLSNLINSDSSSEETEGLSNLRITVVKEGGVECLKNYWDSGTQIQSLEVAVVMLRHLAESGPIGEVLVGEGFVQRLVGVLNREVLAVRIAAARAVYALGLNSGRARKEMGELGCVLGLIKMLDGKGVEEKEASAMALSVLLMHPANRRVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLALLVHSKSCRKQMVAAGACVYTQKLVEMDVPGSKKFLESLGRGKIWGVFARP* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1682 583 SUPERFAMILY ARM repeat 166 521 IPR016024 -
Gso4g1682 583 MobiDBLite consensus disorder prediction 1 21 - -
Gso4g1682 583 Gene3D - 392 524 IPR011989 -
Gso4g1682 583 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 30 583 - -
Gso4g1682 583 PANTHER BNAC03G16340D PROTEIN 30 583 - -
Gso4g1682 583 SMART arm_5 277 317 IPR000225 GO:0005515
Gso4g1682 583 SMART arm_5 193 233 IPR000225 GO:0005515
Gso4g1682 583 SMART arm_5 318 358 IPR000225 GO:0005515
Gso4g1682 583 SMART arm_5 411 451 IPR000225 GO:0005515
Gso4g1682 583 SMART arm_5 452 493 IPR000225 GO:0005515
Gso4g1682 583 Gene3D - 153 391 IPR011989 -
Gso4g1682 583 Pfam Armadillo/beta-catenin-like repeat 194 229 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1682 Gso-Chr4 46772842 46775229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1682 165 342 U-box Gene Family AT1G23030 29.775 3.50e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1682 - - gmx:100794077 1045.8