Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1680 ATGGGTTGCGTGCTCGGGACGCCGGCCGGTGCCGGAGATCAGCGCCTTCGCCGGAGCGAGAAGCGCAACGGTGCAGTCGACGAAGGCAATAATGCAGTTGGGCTTCGAGAGAAGGAGAGAAACCGGCATACCGGCGATTTTCCGGGGACTCTTCCGGCGCCGGGGCGCCGGAAGCCTAGACTCGATCCGTGTGCCGTCACGCAGCAGGGATGGCCGTCGTGGCTGATGGCCGTAGCCGGCGAAGCCATCGGCGATTGGACTCCTCGTCGCGCCAACACTTTCGAGAAGCTCGCTAAGATTGGGCAAGGAACGTATAGTAATGTGTATAAGGCGAGGGACCTGGTGACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGAGAAATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTCTTTATTTGGTTTTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCTGCTGGTCAAGGTGTTAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTATCTGGTCTTGAGCATTGCCACAGTCGAGGGGTGTTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGGATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTTTATGATCCTAAGATAAAACAGGCAATGACAAGCAGAGTTGTGACCCTTTGGTATCGCCCTCCTGAGCTGCTTCTTGGGGCTACTGTTTATGGTGTTGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGAAAGCCAATAATGCCTGGCCGAACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGCGGCTCTCCATCTGAGGAATACTGGAGGAAGTATAGATTGCCAAATGCTACTATCTTTAAGCCCCAGCAGCCATATAAACGTTGCATCTTAGAAACATACAAGGACTTTCCTCCATCTTCACTACCTCTAATTGAAACCCTTCTCGCAATAGATCCTGAGGATCGTGGCACTGCCTCAGCAACACTAAATAGTGAATTCTTTACCACAGAGCCTTATGCTTGTGAACCATCAAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAGAGATGAAGAAGCAAGAAGGCAAAAGGCTCTAAATGGGAAAGCTAGTGCAGTTGATGGTGCAAAAAAAGTCAGAGTACGTGAGCGTGAACGTGGTCGGGCTGTTCCAGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATACCCGCAAGATGCATCAAATAAAGGACCTGTTTCATTTGGCGCCCCTGACACTTCCTTCTCTTCAGGGATATTTAATTCAAAACCTTCTGGACATGTTAGGAATCATGCTGCTGCAGGGCTTCACAGAGGGAGGAAAACTAAGAAAGATGAGTCCCAGATGGCATCATCATGGAAATTCATGCGTCCATTCAAACCATCAACAGCTGGACTTTCCATGGATTTATTATTTAGGAGCAAATGA 1680 0.4762 MGCVLGTPAGAGDQRLRRSEKRNGAVDEGNNAVGLREKERNRHTGDFPGTLPAPGRRKPRLDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKIKQAMTSRVVTLWYRPPELLLGATVYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYRLPNATIFKPQQPYKRCILETYKDFPPSSLPLIETLLAIDPEDRGTASATLNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKASAVDGAKKVRVRERERGRAVPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKGPVSFGAPDTSFSSGIFNSKPSGHVRNHAAAGLHRGRKTKKDESQMASSWKFMRPFKPSTAGLSMDLLFRSK* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1680 559 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1680 559 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1680 559 MobiDBLite consensus disorder prediction 462 538 - -
Gso4g1680 559 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Gso4g1680 559 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 66 539 - -
Gso4g1680 559 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1680 559 MobiDBLite consensus disorder prediction 491 508 - -
Gso4g1680 559 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Gso4g1680 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Gso4g1680 559 PANTHER CELL DIVISION PROTEIN KINASE 66 539 - -
Gso4g1680 559 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Gso4g1680 559 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Gso4g1680 559 CDD STKc_CDK9_like 94 378 - -
Gso4g1680 559 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1680 Gso-Chr4 46747496 46752191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1680 86 412 Core Cell Cycle Gene Families AT5G10270 51.020 8.33e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso4g1680 Pkinase 1.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1680 K08819 - gmx:100793033 1122.84