Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1664 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCAACCTTACAACAACACAGAGGAGCAATGGAGGAGCAAAACCGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCAGGAGTTTCCAAAATGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATAAACAGCACATCCCTCACAGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTATCATAGGCGCCATAAGGTGTGTGAGCTCCATTCCAAGACCCCAGAGGTCACAATTGGTGGCTTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGAGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAAGCCCACACGTATATCCATCCACTGCCATAGTGAGCCCAGCTTGGAGTGCTTCACTTGTCACTTCCTCTGCAGATGCTAGGTTGCACAACCACAACCAACAACAACACCACCACCACCAACAAGACCTTTTTCTTGGATCTTCCCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAACAACCATCCCTCCACAGCTGCAGCACTCAGCAGCCAAACCCCGCCACCTTTTCCATCCTCTTCCGTTCGCCACACCCTTCTCAGGACCGACCCTCTATCAGAAACTTGCGGCGGAGCTAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACTAACAATAATTCGGTGCATGACACTACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGGAATGGCTTGAACCAAATGGTGCAGCCTCCTCCCTCAATGTCTCTCATGCAGCCCTTAGGCCTGAGCTTGCAGGATAATAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCGTGTATAGCTTGGCTTCTGATCATGGATCCCAGTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1194 0.4765 MDWNLKAPSWDLVDVDKATLQQHRGAMEEQNRFGVYRMKGEFSVDLKLGHHVGNSGTESALANKSKDAAAAGVSKMASSPSGSSKRARAINSTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGFKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSSPHVYPSTAIVSPAWSASLVTSSADARLHNHNQQQHHHHQQDLFLGSSHKEGKQVAFLHNNHPSTAAALSSQTPPPFPSSSVRHTLLRTDPLSETCGGARSKMFCESLTTTTTNNNSVHDTTPCALSLLSSSQTHTPGNGLNQMVQPPPSMSLMQPLGLSLQDNNSLESVDHCSSVYSLASDHGSQCNEAAPQLFPFQWE* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1664 397 Pfam SBP domain 99 172 IPR004333 GO:0003677
Gso4g1664 397 SUPERFAMILY SBT domain 97 178 IPR036893 GO:0003677|GO:0005634
Gso4g1664 397 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Gso4g1664 397 MobiDBLite consensus disorder prediction 262 281 - -
Gso4g1664 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 11 397 - -
Gso4g1664 397 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Gso4g1664 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 397 IPR044817 GO:0003677
Gso4g1664 397 MobiDBLite consensus disorder prediction 160 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1664 Gso-Chr4 46472236 46477070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1664 1 397 SBP-box Gene Family AT5G50670 40.389 6.58e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso4g1664 SBP 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1664 - - gmx:100787407 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1664 4 46472236 46477070 Gso6g1422 6 14173138 14178298 GST
Gso5g1735 5 40671273 40675333 Gso4g1664 4 46472236 46477070 PCT
Gso8g0096 8 932625 936126 Gso4g1664 4 46472236 46477070 PCT
Gso4g1664 4 46472236 46477070 Gso5g1735 5 40671273 40675333 PCT
Gso4g1664 4 46472236 46477070 Gso8g0096 8 932625 936126 PCT