Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1656 ATGGAGAACAACCAGCAACAAGGCGCTCAAGCCCAATCGGGACCGTACCCCGGCGGCGCCGGCGGAAGTGCAGGTGCAGGTGCAGGTGCAGGCGCGGCCCCGTTCCAGCACCTGCTCCAGCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCGTACCAGCGGCAAGAGATCGAGCACGTGAACGACTTCAAGAACCACCAGCTCCCCTTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCCGAGGCCCCCATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGACGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACTCGCACCGACATTTTCGACTTCCTCGTCGACATCGTCCCCCGCGACGAGATCAAGGACGACGCCGCGCTCGTCGGGGCAACGGCCAGTGGGGTGCCTTACTACTACCCGCCCATTGGCCAGCCTGCCGGGATGATGATTGGCCGCCCCGCCGTCGATCCCGCCACCGGAGTTTATGTCCAGCCGCCCTCCCAGGCCTGGCAGTCCGTCTGGCAGTCCGCCGCCGAGGACACGCCCTACGGCACCGGTGCCCAGGGGAACCTTGATGGCCAGAGCTGA 669 0.6547 MENNQQQGAQAQSGPYPGGAGGSAGAGAGAGAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHADENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDTPYGTGAQGNLDGQS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1656 222 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 222 - -
Gso4g1656 222 Gene3D Histone, subunit A 33 145 IPR009072 GO:0046982
Gso4g1656 222 MobiDBLite consensus disorder prediction 202 222 - -
Gso4g1656 222 SUPERFAMILY Histone-fold 40 139 IPR009072 GO:0046982
Gso4g1656 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 67 130 IPR003958 -
Gso4g1656 222 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 222 - -
Gso4g1656 222 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1656 Gso-Chr4 46398324 46402704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1656 28 221 CCAAT-HAP5 Transcription Factor Family AT3G48590 78.037 9.43e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso4g1656 CBFD_NFYB_HMF 2.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1656 - - gmx:100783316 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1656 4 46398324 46402704 Gso6g1429 6 14242005 14246583 GST