Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1646 ATGGTTTCAACGAGACGCAACAGTGGGTCTTTCTCCAACAGTAACAAGAGGTCCTCTTCTTCTTCCGAAGACAAGACTCCTTCCCCTCCCCCTAAGCGCCAAAAGGTCGACAATGGTGCCGCCGCGTCGGAGAAACCGATGCCGGCGGCGGAAAATTCCAAGGAATTGGGCACGCCGGAGCCTCCCGCTGATTCCGTAGAATGCGCCGCTCAGGACGCCCAGATCTCCGGCGCCGCCAGTCCCGACGGCAAGGCCGAGGCCACTCCGCCGATCGCCGATGGTTCTACACCGACTGTGGTGGCTGATAAACCTAGGGGTTCGTTCTCTTCTTGGAGTGTACATCCGAAGCAAAACCCAAATTTCGAAGCTTCAGTTCCATGGTGCAGACTCTTGTCTCAGTCTGCGCAGAATCCGAATGTTTTAATTTGCACACCCAACTTTACTATTGGCTCAAGTAGGAGTTGCAATTTTGTGTTGAAGGATCAGACTATAAGTGCAAATTTGTGCAAGATCAAGCACACGCAGCGCGAGGGAAGTGTCGTGGCTGTGCTAGAAAGTATGGGTAGCAAAGGATCGGTGGTAGTGAATGGGACTCTCGTCAAGAAGAGTACCAGCTGCATGCTTAACTCTGGGGATGAGGTGGTTTTTGGTTTGCTGGGGAATCATTCTTATATTTTTCAGCAAATAAATCCTGAAGTTACAGTTAAGGCTGCAGAAATTCAGGGTGGCGTTGGCAAGTTTTTTCAGTTTGAGAGGAGGGCTGGAGACCTGGCTGGAGCTTCTATTTTGGCCTCTCTTTCTAGCCTCAGACCAGAGCTTACAAGATGGAAATCTCCATCTCAGACTGCCAGTAAACCTCAGCAGGGTACAGATGTGTCTAGTCATTCTGTTCTCCCTGATGGTACAGAAACTGAGCTCGATGGCCTGGAAGGCAACTCAGCTCCAAATGTAGCGACTGATAAAGCTTCTGATGTTGGAACAAGTGACAAGAATTCACCTATGGATTGCGATCCAGATGATGCAGGCACAGAGGCAGGCAATGTATTTGAAGAAAGAAATGGGACGAGGGATGCGCAAGCTGCATCAACTTCGGGTACTTCTGTACGCTGTGCGGTTTTTAAAGAAGATGTCCATGCTGCAATACTGGATGGGAAAGAAATAGAAGTGTCCTTAGACAACTTCCCGTACTACTTGAGTGAGAATACAAAAAATGTCCTAATTGCTGCTTGCGTTATACACCTGAAGCATAAAGAACTTGTGAAGTACACCACAGATCTTACAACCATAAACCCCCGTATTCTACTCTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCATTCGCTTTTGGGTGGTTTATCCTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAGTGCTGACAAATCCTGTGGCTATGCTAAACAAAGTCCTACAGCCACAGACATGGCCAGGTGCATGGATCCATCAGCTAGTGAACCAGAAACGCCTAACTCCTCAAATGCACCTACTCCATATGGCTTTGAGTCTCAACCTAAGTTGGAAGCTGATAATGTACCATCTACCTCCGGGACAGCTAAAAATTGTGTGTTTAAACTAGGTGACAGGGTAAAATATAGTTCATCTTCTGGGGGCTTGTATCAGCTTCAGACTATTTCTTCAAGCAATCGCATATTCAGGGGTCCAGCTAATGGAAGTCGGGGGAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGCGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTTTGTGTGAGCCTGGTCAAGGATTTTTCTGCAATGTGACTGATCTTCGATTGGAAAACAGTGGCATTGAAGAACTTGACAAATTACTTATTAATACATTGTTTGAGGTTGTGGTTAGTGAGAGCAGAGATGCACCTTTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAGTTGGAAATGGAGATCCATTTTCATTTAAAAGTAGGCTTGAAAATCTTCCGGACAATGTGGTCGTAATAGGTTCACACACTCACACTGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTCGGAAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCGGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAGGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACAATTCACATGCCACAGGATGAGACACTTCTAGCATCTTGGAAGCAACAACTCGATCGAGATGTTGAGACTCTTAAAATTAAAGGAAATTTGCACAACTTACGCACAGTTTTGAGCCGATGTGGGGTGGAATGTGAAGGACTAGAGACCTTGTGCATTAAGGATCAGACACTTAGTATTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCGCCATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGTATGGGATTGGGATCTTACATGCTATCCAGAATGAGTCGAAAAGCCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAATGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACTTTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCCGAGCTATTTTGCAAAGGGCAATTAACCAAGCCGTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAGACAATGCTTGCAAAGGCAGTTGCTACCGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGTATCACATCTAAGTGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATATTAATATGGATGCAATTGCAAGTATGACTGATGGATATTCCGGAAGCGATCTAAAGAATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGATTTCAAATATGCTCATCAACAGGTCTGTGCAAGTGTTTCTTCTGAATCCATAAATATGACCGAGCTTCAACAATGGAACGAACTATATGGTGAAGGTGGTTCAAGAGTTAAAAAAGCATTAAGCTATTTCATGTGA 3621 0.4424 MVSTRRNSGSFSNSNKRSSSSSEDKTPSPPPKRQKVDNGAAASEKPMPAAENSKELGTPEPPADSVECAAQDAQISGAASPDGKAEATPPIADGSTPTVVADKPRGSFSSWSVHPKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRSCNFVLKDQTISANLCKIKHTQREGSVVAVLESMGSKGSVVVNGTLVKKSTSCMLNSGDEVVFGLLGNHSYIFQQINPEVTVKAAEIQGGVGKFFQFERRAGDLAGASILASLSSLRPELTRWKSPSQTASKPQQGTDVSSHSVLPDGTETELDGLEGNSAPNVATDKASDVGTSDKNSPMDCDPDDAGTEAGNVFEERNGTRDAQAASTSGTSVRCAVFKEDVHAAILDGKEIEVSLDNFPYYLSENTKNVLIAACVIHLKHKELVKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHSLLGGLSSKEAELLKDGFSADKSCGYAKQSPTATDMARCMDPSASEPETPNSSNAPTPYGFESQPKLEADNVPSTSGTAKNCVFKLGDRVKYSSSSGGLYQLQTISSSNRIFRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGLCEPGQGFFCNVTDLRLENSGIEELDKLLINTLFEVVVSESRDAPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEAPKPNKTLTKLFPNKVTIHMPQDETLLASWKQQLDRDVETLKIKGNLHNLRTVLSRCGVECEGLETLCIKDQTLSIENAEKIVGWALSRHLMQNAETDPDAKLVLSCESIQYGIGILHAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDINMDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAAVSEGRPAPALSGSADIRSLNMEDFKYAHQQVCASVSSESINMTELQQWNELYGEGGSRVKKALSYFM* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1646 1206 Gene3D - 900 1181 IPR027417 -
Gso4g1646 1206 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 84 1206 - -
Gso4g1646 1206 MobiDBLite consensus disorder prediction 1 101 - -
Gso4g1646 1206 CDD FHA 127 227 IPR000253 GO:0005515
Gso4g1646 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1180 IPR027417 -
Gso4g1646 1206 SMART AAA_5 938 1075 IPR003593 -
Gso4g1646 1206 CDD AAA 940 1073 - -
Gso4g1646 1206 MobiDBLite consensus disorder prediction 275 346 - -
Gso4g1646 1206 Gene3D - 1074 1168 - -
Gso4g1646 1206 MobiDBLite consensus disorder prediction 511 526 - -
Gso4g1646 1206 ProSitePatterns AAA-protein family signature. 1045 1064 IPR003960 GO:0005524|GO:0016887
Gso4g1646 1206 MobiDBLite consensus disorder prediction 316 330 - -
Gso4g1646 1206 MobiDBLite consensus disorder prediction 501 542 - -
Gso4g1646 1206 Pfam ATPase family associated with various cellular activities (AAA) 942 1071 IPR003959 GO:0005524|GO:0016887
Gso4g1646 1206 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 84 1206 - -
Gso4g1646 1206 SUPERFAMILY SMAD/FHA domain 125 226 IPR008984 GO:0005515
Gso4g1646 1206 MobiDBLite consensus disorder prediction 1 27 - -
Gso4g1646 1206 MobiDBLite consensus disorder prediction 275 300 - -
Gso4g1646 1206 Pfam FHA domain 148 217 IPR000253 GO:0005515
Gso4g1646 1206 Pfam AAA+ lid domain 1095 1130 IPR041569 -
Gso4g1646 1206 Gene3D - 126 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1646 Gso-Chr4 46256053 46278652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1646 901 1153 Calmodulin-binding Proteins AT3G56690 41.154 2.08e-43 170
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1646 4 46256053 46278652 Gso6g1444 6 14374802 14394693 GST
Gso5g0394 5 4158253 4176266 Gso4g1646 4 46256053 46278652 PCT
Gso17g1091 17 10372521 10384899 Gso4g1646 4 46256053 46278652 PCT
Gso4g1646 4 46256053 46278652 Gso5g0394 5 4158253 4176266 PCT
Gso4g1646 4 46256053 46278652 Gso17g1091 17 10372521 10384899 PCT