Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Gso4g1643
ATGTCCGCTCTCACATCTCTCTCACTCTCTCTTCGCACACTCTCCCTCCGCCCCAAACCAACAACCTCACTTTCCGCTTCACTCTCTGCAATCCCAGGAACAGGAAGTAGCGATGGATCTAAAACCAAAGTACCTCCCCGCAAAAGAACGAGGAGAATAGAAGGCCCTAGAAAGAGCATGGAGGACTCCGTTCAACGAAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCGTTCTGCCCATTGGCGGTTTGGGAGAAATTGGGATGAATTGCATGCTAGTCGGGAACCATGACCGCTACATTCTCATTGATGCTGGTGTCATGTTTCCAGATTATGATGAACTTGGAGTTCAAAAGATTATACCTGATACCACGTTTATAAGAAAGTGGAGCCACAAGATTGAAGCGCTTGTCATAACGCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATTCCAGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACATTGGAGCTTATGAAAAAACGTTTGAAGGAACATGGTATTTTCGTTCCATCTAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCCATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAAACACCACTTGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTGACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATTAGTGAATCTGTTGTGGCAGATGCTTTGTTGAGACATATTTCAGCATCTAAAGGAAGGGTTATTACTACCCAATTTGCATCAAATCTACATCGGCTTGGTAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTTTCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAGATTGGATCAACAATTGTTATGGGGAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCAATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGGATACGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTTCTTTCCAATGGTTTCATTTCCCTTGGAAAAGAGAACTTACAGTTGAAATATAGTGATGGCGATAGAGCATTTGGTACATCTAGTGATCTCTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAGTTTTAGATGGTTCGGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACCACGAGATGCTTATGGCTTGACAAGGGGAAACTGATGGATGCACTCTACAAAGCTGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTTGCTCACATCGAAAGAATTGTGTCTGAGGTATTGAGGAAGACGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAAACCTGCAGCCATTCTTGCTGATGAGATAAACACGAAATTGTCTGGCAAATCCCATGTGGGTCTTGGAATGTCAGCCTTAAGTAAAGCGGTGGATGGACATAGGAAGGGAAATCAGTCCACTGCACTGCAAGTTAAAGATGATAGTATTGGTAATGCAAGTGGAGCAGGGGGTGATTTATCCGATGAAAACAACACTGCAAGTGGGCCTGAGGGTTATTTATCCGAGGAAGACAACACTGCAAGTGGGGCCGAGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATCAGTGCTGACAATAGTTATGTTTCACAAAAGGAGCAAAAGTCCAATTTGAAGAAAGATGATTCTGAAGACATTGATGAAGCCAAGTCAGAAGAAACGTCTAATTCTGAACCCAAGCTTTCAAAATTAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTAAGTGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATTTCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCCGGACAGTGCAAATCTCTGTGGACATCTTTGGTAGTCAAATATGAGGGGATTAAGAATAAAAATGATAGCAAGAAAAGTTGGCCATACATAGAAGACATGGAAAGGATAATGTCTGATAAAGAAGCCCCTGCAACAAAATGA
2667
0.4226
MSALTSLSLSLRTLSLRPKPTTSLSASLSAIPGTGSSDGSKTKVPPRKRTRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTLELMKKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLSSYGSSHAFKLTKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSDLFIDERLRIALDGIIVISMEIFRPKVLDGSAENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERIVSEVLRKTVRKYSGKRPEVIAIAIEKPAAILADEINTKLSGKSHVGLGMSALSKAVDGHRKGNQSTALQVKDDSIGNASGAGGDLSDENNTASGPEGYLSEEDNTASGAEGDLSESEDSDEFWKPFITSLPVEKSISADNSYVSQKEQKSNLKKDDSEDIDEAKSEETSNSEPKLSKLVKRNKWKTEEVKKLIGMRGELSDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVVKYEGIKNKNDSKKSWPYIEDMERIMSDKEAPATK*
889
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Gso4g1643
888
MobiDBLite
consensus disorder prediction
672
686
-
-
Gso4g1643
888
MobiDBLite
consensus disorder prediction
19
64
-
-
Gso4g1643
888
MobiDBLite
consensus disorder prediction
669
733
-
-
Gso4g1643
888
PANTHER
RIBONUCLEASE J
1
888
-
-
Gso4g1643
888
Gene3D
-
281
431
IPR042173
-
Gso4g1643
888
PANTHER
RNA-METABOLISING METALLO-BETA-LACTAMASE
1
888
-
-
Gso4g1643
888
MobiDBLite
consensus disorder prediction
761
788
-
-
Gso4g1643
888
Pfam
Zn-dependent metallo-hydrolase RNA specificity domain
437
474
IPR011108
-
Gso4g1643
888
Pfam
Myb/SANT-like DNA-binding domain
794
878
IPR044822
-
Gso4g1643
888
Gene3D
-
84
496
IPR036866
-
Showing 1 to 10 of 21 entries
Previous
1
2
3
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Gso4g1643
Gso-Chr4
46229776
46240153
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Gso4g1643
796
882
Trihelix Transcription Factor Family
AT2G38250
37.079
4.81e-13
68.9
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
Trihelix
Gso4g1643
Lactamase_B
3.9e-10
CL0381
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Gso4g1643
-
-
gmx:100783850
1710.27
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Gso4g1643
4
46229776
46240153
Gso6g1447
6
14410588
14419861
GST
Gso17g1084
17
10296366
10305450
Gso4g1643
4
46229776
46240153
PCT
Gso4g1643
4
46229776
46240153
Gso17g1084
17
10296366
10305450
PCT
Showing 1 to 3 of 3 entries
Previous
1
Next
Select All
Download Selected Rows