Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1643 ATGTCCGCTCTCACATCTCTCTCACTCTCTCTTCGCACACTCTCCCTCCGCCCCAAACCAACAACCTCACTTTCCGCTTCACTCTCTGCAATCCCAGGAACAGGAAGTAGCGATGGATCTAAAACCAAAGTACCTCCCCGCAAAAGAACGAGGAGAATAGAAGGCCCTAGAAAGAGCATGGAGGACTCCGTTCAACGAAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCGTTCTGCCCATTGGCGGTTTGGGAGAAATTGGGATGAATTGCATGCTAGTCGGGAACCATGACCGCTACATTCTCATTGATGCTGGTGTCATGTTTCCAGATTATGATGAACTTGGAGTTCAAAAGATTATACCTGATACCACGTTTATAAGAAAGTGGAGCCACAAGATTGAAGCGCTTGTCATAACGCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATTCCAGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACATTGGAGCTTATGAAAAAACGTTTGAAGGAACATGGTATTTTCGTTCCATCTAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCCATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAAACACCACTTGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTGACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATTAGTGAATCTGTTGTGGCAGATGCTTTGTTGAGACATATTTCAGCATCTAAAGGAAGGGTTATTACTACCCAATTTGCATCAAATCTACATCGGCTTGGTAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTTTCATCTTACGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGCTAAACCGCATATCAGAGATTGGATCAACAATTGTTATGGGGAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCAATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGGATACGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTTCTTTCCAATGGTTTCATTTCCCTTGGAAAAGAGAACTTACAGTTGAAATATAGTGATGGCGATAGAGCATTTGGTACATCTAGTGATCTCTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAGTTTTAGATGGTTCGGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACCACGAGATGCTTATGGCTTGACAAGGGGAAACTGATGGATGCACTCTACAAAGCTGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTTGCTCACATCGAAAGAATTGTGTCTGAGGTATTGAGGAAGACGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAAACCTGCAGCCATTCTTGCTGATGAGATAAACACGAAATTGTCTGGCAAATCCCATGTGGGTCTTGGAATGTCAGCCTTAAGTAAAGCGGTGGATGGACATAGGAAGGGAAATCAGTCCACTGCACTGCAAGTTAAAGATGATAGTATTGGTAATGCAAGTGGAGCAGGGGGTGATTTATCCGATGAAAACAACACTGCAAGTGGGCCTGAGGGTTATTTATCCGAGGAAGACAACACTGCAAGTGGGGCCGAGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATCAGTGCTGACAATAGTTATGTTTCACAAAAGGAGCAAAAGTCCAATTTGAAGAAAGATGATTCTGAAGACATTGATGAAGCCAAGTCAGAAGAAACGTCTAATTCTGAACCCAAGCTTTCAAAATTAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTAAGTGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATTTCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCCGGACAGTGCAAATCTCTGTGGACATCTTTGGTAGTCAAATATGAGGGGATTAAGAATAAAAATGATAGCAAGAAAAGTTGGCCATACATAGAAGACATGGAAAGGATAATGTCTGATAAAGAAGCCCCTGCAACAAAATGA 2667 0.4226 MSALTSLSLSLRTLSLRPKPTTSLSASLSAIPGTGSSDGSKTKVPPRKRTRRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFASSFTLELMKKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLSSYGSSHAFKLTKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSDLFIDERLRIALDGIIVISMEIFRPKVLDGSAENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERIVSEVLRKTVRKYSGKRPEVIAIAIEKPAAILADEINTKLSGKSHVGLGMSALSKAVDGHRKGNQSTALQVKDDSIGNASGAGGDLSDENNTASGPEGYLSEEDNTASGAEGDLSESEDSDEFWKPFITSLPVEKSISADNSYVSQKEQKSNLKKDDSEDIDEAKSEETSNSEPKLSKLVKRNKWKTEEVKKLIGMRGELSDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVVKYEGIKNKNDSKKSWPYIEDMERIMSDKEAPATK* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1643 888 MobiDBLite consensus disorder prediction 672 686 - -
Gso4g1643 888 MobiDBLite consensus disorder prediction 19 64 - -
Gso4g1643 888 MobiDBLite consensus disorder prediction 669 733 - -
Gso4g1643 888 PANTHER RIBONUCLEASE J 1 888 - -
Gso4g1643 888 Gene3D - 281 431 IPR042173 -
Gso4g1643 888 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 888 - -
Gso4g1643 888 MobiDBLite consensus disorder prediction 761 788 - -
Gso4g1643 888 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 437 474 IPR011108 -
Gso4g1643 888 Pfam Myb/SANT-like DNA-binding domain 794 878 IPR044822 -
Gso4g1643 888 Gene3D - 84 496 IPR036866 -
Gso4g1643 888 ProSiteProfiles Myb-like domain profile. 789 853 IPR001005 -
Gso4g1643 888 Coils Coil 759 779 - -
Gso4g1643 888 Pfam Metallo-beta-lactamase superfamily 93 238 IPR001279 -
Gso4g1643 888 MobiDBLite consensus disorder prediction 753 788 - -
Gso4g1643 888 CDD RNaseJ_MBL-fold 83 494 - -
Gso4g1643 888 MobiDBLite consensus disorder prediction 696 713 - -
Gso4g1643 888 CDD GT1 795 860 - -
Gso4g1643 888 SUPERFAMILY Metallo-hydrolase/oxidoreductase 80 494 IPR036866 -
Gso4g1643 888 SMART Lactamase_B_5a 92 289 IPR001279 -
Gso4g1643 888 MobiDBLite consensus disorder prediction 19 41 - -
Gso4g1643 888 Gene3D - 797 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1643 Gso-Chr4 46229776 46240153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1643 796 882 Trihelix Transcription Factor Family AT2G38250 37.079 4.81e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso4g1643 Lactamase_B 3.9e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1643 - - gmx:100783850 1710.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1643 4 46229776 46240153 Gso6g1447 6 14410588 14419861 GST
Gso17g1084 17 10296366 10305450 Gso4g1643 4 46229776 46240153 PCT
Gso4g1643 4 46229776 46240153 Gso17g1084 17 10296366 10305450 PCT