Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1640 ATGGTTGAGAACCGGGAAAACAACAACAGCCACTCAAGAAGATCACTCACTCTTCATTTCATTTCAGTAATGGCTACCCAAACCCAAACACAGTCACATCCAAACACCACCATCGACCCAAACAGCGGCTTCTGTTCCCATTCCAGAACCTTCCACACCCTCCGTCCAAACGTCCCTCTCCCTCCGCCCTCCCACCCCCTCTCCCTCACCGACTACGCCTTCTCCCTCCTCCCCGCCGCCGCCACCACCACCTCCGCCCTCATCGACGCCGCCACCGACCGCCACCTCTCTTACTCTCTCCTCCTCCGCCAAGTCCAATCCCTCGCCTCCTCTCTCCAATCCCTCACCCCTCTCTCCAAAGGCCACGTGGCACTCATCCTCACCCCATCCTCCCTGCACGTCCCCGTACTCTACTTCTCCCTCCTCTCCCTCGGCGTCACCATCGCCCCCGCCAACCCCCTCAGTTCCCTATCCGAGTTGACTCACATCGTCAAACTCGCCAAACCCGCCATCGCGTTCTCCACCTCGAACGCCGCGAAAAACATTCCCTCCCTCAAATTCGGCACAATCCTCCTCGATTCCCCGTTCTTCCTCTCCATGCTCGACGACGACGAAACCGTTAACAGAGACTCGCGTGCTCACCGAGTCGAAGAAGTGAGTCAGTCTGACTCGGCGGCGATTCTATTCTCCTCTGGCACCACGGGGCGCGTGAAGGGCGTGCTCCTCACGCACCGCAACTTCATCACGCTGATCGGAGGGTTCTATCACCTCAGAAACGTGGCGGATGGTGACCCTCACCCGGTGTCGCTCTTCACGCTGCCGCTGTTCCACGTGTTCGGGTTCTTCATGCTGGTCAGGGCCATCGCCGTCGGGGAGACGCTCGTGTTCATGCAGAGGTTCGATTTCGAAGGGATGCTAAAGGCTGTGGAGAGGTATGGAATCACGTACATGCCGGTGTCGCCGCCGCTCGTGGTGGCGCTGGCGAAGTCGGAACTCGTGAAGAAGTATGATCTCAGCTCGCTACGGTATTTGGGCTGTGGCGGCGCGCCGCTCGGGAAGGAAGTCGCCGACGACTTCAGAGGCAAATTCCCTAACGTGGAAATTGGGCAGGGATATGGTTTGACTGAAAGTGGAGGAGGGGCAGCTAGAGTGTTAGGGCCTGATGAGTCTAAGCGCCATGGTTCTGTGGGTCGACTAGCAGAAAATATGGAGGCCAAGATAGTGGACCCTGTTACTGGAGAGGCATTACCTCCTGGCCAAAAAGGGGAGCTCTGGTTGCGAGGTCCAACAATCATGAAAGGTTATGTAGGAGATGAGAAGGCGACAGCTGAAACATTGGATTCAGAAGGGTGGCTGAAGACGGGAGATCTTTGTTATTTTGACTCTGATGGCTTCCTCTACATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCTGCTGAATTGGAACATATACTACACACCAATCCCGAAATTGCTGATGCTGCAGTAGTTCCGTATCCTGATGAAGAGGCAGGGCAGATTCCAATGGCCTTTGTAGTAAGAAAACCTGGAAGCAACGTCACTGCAGATCAGGTCATGGAGTTTGTGGCAAAGCAGGTTTCTCCATACAAGAAGATACGACGAGTTTCTTTTATCAAATCTATCCCAAAATCTCCGGCTGGGAAAATTTTGAGAAGAGAATTAGTTGATTATGCACTATCTAGTGGTTCATCCAAATTGTGA 1743 0.5404 MVENRENNNSHSRRSLTLHFISVMATQTQTQSHPNTTIDPNSGFCSHSRTFHTLRPNVPLPPPSHPLSLTDYAFSLLPAAATTTSALIDAATDRHLSYSLLLRQVQSLASSLQSLTPLSKGHVALILTPSSLHVPVLYFSLLSLGVTIAPANPLSSLSELTHIVKLAKPAIAFSTSNAAKNIPSLKFGTILLDSPFFLSMLDDDETVNRDSRAHRVEEVSQSDSAAILFSSGTTGRVKGVLLTHRNFITLIGGFYHLRNVADGDPHPVSLFTLPLFHVFGFFMLVRAIAVGETLVFMQRFDFEGMLKAVERYGITYMPVSPPLVVALAKSELVKKYDLSSLRYLGCGGAPLGKEVADDFRGKFPNVEIGQGYGLTESGGGAARVLGPDESKRHGSVGRLAENMEAKIVDPVTGEALPPGQKGELWLRGPTIMKGYVGDEKATAETLDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEEAGQIPMAFVVRKPGSNVTADQVMEFVAKQVSPYKKIRRVSFIKSIPKSPAGKILRRELVDYALSSGSSKL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1640 580 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 53 569 - -
Gso4g1640 580 CDD 4CL 84 568 - -
Gso4g1640 580 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Gso4g1640 580 Pfam AMP-binding enzyme C-terminal domain 487 562 IPR025110 -
Gso4g1640 580 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 53 569 - -
Gso4g1640 580 Gene3D - 474 574 IPR045851 -
Gso4g1640 580 SUPERFAMILY Acetyl-CoA synthetase-like 83 573 - -
Gso4g1640 580 Gene3D - 55 473 IPR042099 -
Gso4g1640 580 Pfam AMP-binding enzyme 85 478 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1640 Gso-Chr4 46183328 46188671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1640 30 580 Monolignol Biosynthesis Gene Families AT5G63380 60.247 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1640 K01904 - gmx:100777435 1095.88