Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1627 ATGGCGGCGGCAGCGGTGGCGGAGGTGAGGAAGGCCCCACGGCCGGGCAAGGGCGGGTACGAAGCGCACGGCCTGAGCGAGGAGGAGGCGCGAGTGCGCGCCATCGCGGAGATCGTCAGCTCCATGGTGGACCTCTCTCACAAAGGCCAGAACGTGGACCTCAACGCGCTCAAGTCCGCGGCGTGCCGCAAGTACGGGCTCTCACGCGCGCCCAAGCTCGTGGAGATGATCGCGGCGCTCCCCGACGCCGAGCGCGAGACGCTCCTCCCCAAGCTCCGCGCCAAGCCCGTCCGCACCGCCTCCGGAATCGCCGTCGTCGCGGTCATGTCGAAGCCGCACCGGTGCCCGCACATCGCCACCACCGGCAACATCTGCGTCTACTGCCCCGGGGGACCTGACTCCGATTTCGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACCAGCATGCGCGCAATTCGTGCGAGGTATAATCCATATGTCCAAGCGAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGTTGAGTTTATCTTAATGGGAGGTACCTTCATGTCACTTCCGGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGACACACATCTGCTAATGTGGAAGAGGCTGTGGCATACTCTGAGCATGGGGCAACCAAGTGTATTGGTATGACGATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCGGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGACCTTCCTAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGTGTCCCATGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCACCTGAGCAACTTGTGGACATTATAGCAAGGATCCTTGCAATGGTACCCCCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGAAATCTGAGGGAGCTAGCATTAGCTCGAATGGATGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAAGCCAGAAGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTGCGACTGCGAAAATGTGGCCGCAACACTACTTGTCCAGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCACGTTTATGGAACTGCTGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGCACACTTTTAATGGAGGAGGCAGAACGTATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGAAATAA 1695 0.5115 MAAAAVAEVRKAPRPGKGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFECPMFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVK* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1627 564 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 50 562 IPR034687 -
Gso4g1627 564 Gene3D - 414 563 - -
Gso4g1627 564 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Gso4g1627 564 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Gso4g1627 564 SFLD ELP3-like 53 562 IPR034687 -
Gso4g1627 564 SFLD elongater protein-like 53 562 - -
Gso4g1627 564 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Gso4g1627 564 MobiDBLite consensus disorder prediction 1 23 - -
Gso4g1627 564 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016407
Gso4g1627 564 SUPERFAMILY Radical SAM enzymes 135 374 - -
Gso4g1627 564 CDD Radical_SAM 112 359 - -
Gso4g1627 564 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 562 IPR039661 -
Gso4g1627 564 PIRSF HAT_Elp3 20 563 IPR034687 -
Gso4g1627 564 Pfam Radical_SAM C-terminal domain 329 407 IPR032432 -
Gso4g1627 564 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 564 IPR000182 GO:0016407
Gso4g1627 564 PANTHER ELONGATOR COMPLEX PROTEIN 3 2 562 IPR034687 -
Gso4g1627 564 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1627 Gso-Chr4 46039117 46044274 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso4g1627 Radical_SAM 2.3e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1627 K07739 - gmx:100818764 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1627 4 46039117 46044274 Gso6g1460 6 14590622 14595821 GST