LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso4g1623	ATGTGTGGCGAGAGACAACGAGTTTCTGCTTGTGCTGCCTGCACCAACAACTGTCTACTGTTCCACAAAACAAAACAAACCTCACCTACCTCTTTCTTCAAGCTCATCACTAAACGAGAACATTTAACAACTTTGTATATCCCTCCTGCTTTTAGTAGTACTGTGTCAGACTTGGTTAATAAGAAAATTGCTCTCAATGATTCAAGTGAGCGGCAATGGAATGTAAAAGTATCAGGGTTTAATGGTTCTTTTGCTTTCATGGAAGGATGGAGTACTTTTTCATTGAATCATGGGGTTAAAGTTGGATATCTTCTGGTATTCAATTACGTTAAGGATTTGCACTTTGATGTCAAGATCTATGATCCATCTGCTTGTGAAAAGCTTAATTTTCCTAAAACAAGAAATCAGAAGAAAAGAAGTAGGGGGAGAAGTGGCTCTCCAGTTAGAGATTGTATGTTGGTTGGTCAAGAATCCAATGCCTTAGTTGTCACCCAACATTATGTGCCGAAAATGAAAAGCCAGCGCAGTGAGGTTGACTTAGTAGTACGAAAAAATGGTGAAGAGAGTGGCCAACTTATGTGCATATCAGAACTCCATGAAGACCCATGTTATTCGACAAGCCTAGAATTTGACCAGAGCCATGGTGTTAATGGGACCATGAAAATTGTGAATGGAGATTTAAAAGTTTCTAATGTTGATTACGGATCTCACATATTTGAAAATGATGCAATCGTATGTAGTAAAGATACTATGTTTGAAGGGATATTCAGTATGGCAGCTGCCTTAGATATATCTGAATTTGAAATGTCTGGGAGAAGTACTTCTCTAGGTGAGGCAGACAAAAGCACACATGACAAGACTTCAACTTTGAATATTGAAGAAAACAAAGAGAGCAAAGCCATCATGTACAGCGGGGAAGCTCAAGAGTGCCAATTTTCCAATGTCTTAGAAAGTGATCAGGCTGCAATATCCAAAAAGGAACCTGCTTTGCATATTGATGGTTCTTGCAATACCAAAAACAAGTTCAATGAGATCTCAAATCACTTAGATACTTATATCCACAATGGTGAAATGAAGAAATTGCCTGTGGACAAGACTCCCAAACTGTACAGTTCCGTGGATAAATTGAATGTAACAGGGTTGCCAAAGGAGACTAAGGGAAAGTTGGATCACTATTCTGACCCATTTAATCAAGATAATGAGAGTCACTTTAAAACTGCACCTCCTCTCATGTCCAACGGGGAAGCTCAAGAGTGCCAATTTTCTGAGGGCTTAGAAAGTGATCAAGCAGCAATATCCAAAAAAGAACCTGCTTTGCATATTTGTGGTTTTAGTGACACCAAACAGAACTTCGATGGAATCTCAAATGACTTAGATGGTCATATTTACAATGGTGAAATGAAGAAATTGCCTATGGACATGACTCCCAAATTGTGTGGTTCCATGGATAAATTGAATATAACAGAGTTGCCAAAGGAGATTAAGGACTCTGACATATCTAATCAAGATGATGAGAGCCACTTTAAAACTGCACCCCCTCTCTCCTGTGTGGTGACCAATGATAATGATAATGTTTCCCTTAAATTGCCCGAATACCTGCCTTTGACTCGCAGGGTAAAACCATTCACGCATAAGAAGATGGTAGTGTTACTTCGGGATTCACAGATGAGATTGTGGCCTGTCTTTTACCATGAACAACCTCGGTTACTGACACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAACCTGAAGATGAGTGTATTTTTGAGGTTGAGCCTGACCCTGAGAGCAGGTATCAACGTATCTTAGCTGTAAGTATAGTCCACAAGTCATGA	1842	0.3941	MCGERQRVSACAACTNNCLLFHKTKQTSPTSFFKLITKREHLTTLYIPPAFSSTVSDLVNKKIALNDSSERQWNVKVSGFNGSFAFMEGWSTFSLNHGVKVGYLLVFNYVKDLHFDVKIYDPSACEKLNFPKTRNQKKRSRGRSGSPVRDCMLVGQESNALVVTQHYVPKMKSQRSEVDLVVRKNGEESGQLMCISELHEDPCYSTSLEFDQSHGVNGTMKIVNGDLKVSNVDYGSHIFENDAIVCSKDTMFEGIFSMAAALDISEFEMSGRSTSLGEADKSTHDKTSTLNIEENKESKAIMYSGEAQECQFSNVLESDQAAISKKEPALHIDGSCNTKNKFNEISNHLDTYIHNGEMKKLPVDKTPKLYSSVDKLNVTGLPKETKGKLDHYSDPFNQDNESHFKTAPPLMSNGEAQECQFSEGLESDQAAISKKEPALHICGFSDTKQNFDGISNDLDGHIYNGEMKKLPMDMTPKLCGSMDKLNITELPKEIKDSDISNQDDESHFKTAPPLSCVVTNDNDNVSLKLPEYLPLTRRVKPFTHKKMVVLLRDSQMRLWPVFYHEQPRLLTHGWLDFSRANNIQPEDECIFEVEPDPESRYQRILAVSIVHKS*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso4g1623	613	SUPERFAMILY	DNA-binding pseudobarrel domain	531	596	IPR015300	-
	Gso4g1623	613	SMART	B3_2	32	123	IPR003340	GO:0003677
	Gso4g1623	613	Gene3D	-	23	125	IPR015300	-
	Gso4g1623	613	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1	9	610	-	-
	Gso4g1623	613	CDD	B3_DNA	517	592	IPR003340	GO:0003677
	Gso4g1623	613	ProSiteProfiles	B3 DNA-binding domain profile.	30	123	IPR003340	GO:0003677
	Gso4g1623	613	Pfam	B3 DNA binding domain	32	120	IPR003340	GO:0003677
	Gso4g1623	613	ProSiteProfiles	B3 DNA-binding domain profile.	549	613	IPR003340	GO:0003677
	Gso4g1623	613	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	9	610	IPR044837	-
	Gso4g1623	613	SUPERFAMILY	DNA-binding pseudobarrel domain	27	125	IPR015300	-
	Gso4g1623	613	CDD	B3_DNA	31	121	IPR003340	GO:0003677
	Gso4g1623	613	Gene3D	-	496	612	IPR015300	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso4g1623	22	131	B3 DNA Binding Superfamily	AT4G01580	30.769	2.09e-10	58.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Gso4g1623		B3	9.1e-11	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso4g1623	-		-	gmx:102661564	1252.65