Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1620 ATGGAGCCCCTTGAATCCGAATCGGTTAGCTCCTCCGCCAAGGACCCGCTATTGGGTGAACCATCTTCCTCTGTTCACCCCCTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTACCCCGGTTGATGATGCACTTGGTGAGGAGCTTCAGGGGAAGTTGGATTTGAAGGATGAGGGTGAAAGTGATAATAAAGGTTCGAACTTGGAAGACGGGGGTGAAAAATTGAGCGAGGATAAAGGTTCGAACTTGGAAGATGAGAGTGGAAAATTGAGTGATGAAGGTGCTGCCCCAGAAGGTGGCAAGGGAGAAGGGTGTGATGGTGATCTTGGTGGTGTTGCTAATGACGATGATGGTGTTATTGGTGATGATTTAGTTTCCGTTGCTGATGATGGTGGTGTTGTTCGTGATGATTTAGTTGGTGGTGTTGTTCGTGATGATTTAGTTGTTGTTGTTGATGATGGTGGTGTTGTTCGTGATGATTTAGTTGTTGTTGATGATGATGATGATGGTGTTCGTGATGATGTAGTTGTTGTAGTTGATGATGATGATGGTTGGAATGGTGGTGGTGATGAGGGGTGTGATTGTATTGAGAATGTGAATGTGAATGGGAGTGAGAGTGATAAGGTGGGTGGAGATGTTGAGGGAGTTAAGGATGAGAGGAGCAGTGGTAGAGCTCAACAATACCCTTTGAGGCCTGAGGCTGAAGACTGTGCATTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAATTCAATCATCCGCTTAGGAGGAAAAACCAGGCTAAAAAAGAGAATGCGGGAGAAAGAGAAGAACAGGCAGAAAGATCAGGCCAGATGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTCGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAAGAGTTCATCAGCATCCGCTGCCGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGCCTCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAGGTTTAATCATCCCGATCCTACAACTGTTGGAGGAGGTGATTCTCCTTCTGGTTATGGTAATGGAAGTTCTATTTCGTTACAAGGTGTATCACAATCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAATCTGCTCCTTTTGTGCCGGTGATACTTTCACCTAATCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTCTCTGAGAGGAGTCTGCATCCACCTTCAACATATGTCATGAACAACCCAGCTATGGAATCAAATGTTTATATGCACCATCAAAAACAAATGCTGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAAGATTACCTCTATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGACGTTATGGAATTTGCAAATTTGGACCGGCGTGTAAGTTCGATCACCCAGCGCCCTCAACTATGGCTGGACATGATCAACAATCCACATATATAAACTCAGCTGGTGTTGATGTGGCTGAAAATGGAGGTGTCGAAGATGGGAATCAGCAGTCTGTGTAA 1713 0.4431 MEPLESESVSSSAKDPLLGEPSSSVHPLDHDPQPSDLNHVTPVDDALGEELQGKLDLKDEGESDNKGSNLEDGGEKLSEDKGSNLEDESGKLSDEGAAPEGGKGEGCDGDLGGVANDDDGVIGDDLVSVADDGGVVRDDLVGGVVRDDLVVVVDDGGVVRDDLVVVDDDDDGVRDDVVVVVDDDDGWNGGGDEGCDCIENVNVNGSESDKVGGDVEGVKDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEREEQAERSGQMECKYYLRSGGCKFGKACKFNHTRGKSSSASAAELNFLGLPIRVGEKECLYYMRTGSCKFGANCRFNHPDPTTVGGGDSPSGYGNGSSISLQGVSQSSISSWSSTRPLNESAPFVPVILSPNPGVSPQSSEWNGYQAPVYLSERSLHPPSTYVMNNPAMESNVYMHHQKQMLVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPLCNLSDKGLPLRPDQNVCTYYRRYGICKFGPACKFDHPAPSTMAGHDQQSTYINSAGVDVAENGGVEDGNQQSV* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1620 570 Gene3D - 504 552 - -
Gso4g1620 570 Gene3D - 417 495 - -
Gso4g1620 570 Gene3D - 210 269 - -
Gso4g1620 570 PANTHER PROTEIN PHOSPHATASE RELATED 11 564 - -
Gso4g1620 570 MobiDBLite consensus disorder prediction 208 228 - -
Gso4g1620 570 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Gso4g1620 570 SUPERFAMILY CCCH zinc finger 467 491 IPR036855 GO:0046872
Gso4g1620 570 SUPERFAMILY CCCH zinc finger 284 308 IPR036855 GO:0046872
Gso4g1620 570 SMART c3hfinal6 328 353 IPR000571 GO:0046872
Gso4g1620 570 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Gso4g1620 570 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Gso4g1620 570 SMART c3hfinal6 462 489 IPR000571 GO:0046872
Gso4g1620 570 SMART c3hfinal6 508 535 IPR000571 GO:0046872
Gso4g1620 570 ProSiteProfiles Zinc finger C3H1-type profile. 462 490 IPR000571 GO:0046872
Gso4g1620 570 MobiDBLite consensus disorder prediction 1 18 - -
Gso4g1620 570 ProSiteProfiles Zinc finger C3H1-type profile. 326 354 IPR000571 GO:0046872
Gso4g1620 570 MobiDBLite consensus disorder prediction 49 94 - -
Gso4g1620 570 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 564 - -
Gso4g1620 570 SUPERFAMILY CCCH zinc finger 232 261 IPR036855 GO:0046872
Gso4g1620 570 SUPERFAMILY CCCH zinc finger 510 536 IPR036855 GO:0046872
Gso4g1620 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 511 534 IPR000571 GO:0046872
Gso4g1620 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 259 IPR000571 GO:0046872
Gso4g1620 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 285 305 IPR000571 GO:0046872
Gso4g1620 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 489 IPR000571 GO:0046872
Gso4g1620 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 329 352 IPR000571 GO:0046872
Gso4g1620 570 ProSiteProfiles Zinc finger C3H1-type profile. 508 536 IPR000571 GO:0046872
Gso4g1620 570 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Gso4g1620 570 MobiDBLite consensus disorder prediction 1 118 - -
Gso4g1620 570 SUPERFAMILY CCCH zinc finger 327 353 IPR036855 GO:0046872
Gso4g1620 570 Gene3D - 270 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1620 Gso-Chr4 45899783 45905506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1620 458 557 C2H2 Transcription Factor Family AT3G02830 45.631 7.62e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso4g1620 zf-CCCH 2.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1620 - - gmx:100776363 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1620 4 45899783 45905506 Gso6g1466 6 14714910 14721237 GST
Gso5g0372 5 3911597 3916167 Gso4g1620 4 45899783 45905506 PCT
Gso17g1068 17 10143573 10148248 Gso4g1620 4 45899783 45905506 PCT
Gso4g1620 4 45899783 45905506 Gso5g0372 5 3911597 3916167 PCT
Gso4g1620 4 45899783 45905506 Gso17g1068 17 10143573 10148248 PCT