Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1619 ATGGTGGGAGTTTGTGAGGGAAACGGCGAGGTTTTGGCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACAGGCCGAGCGCGGCGGAGTTCCAGGATCCAATCGGGTACATATTCAAGATCGAGAAGGAAGCTTCAAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAAACCGCAATCGCCAACCTCAACCGCTCACTCGCGGAAGCCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCAGTCCAGCGTCCCGTCTGGCAGAGCGGCGATCGCTACACCTTCAGCGAGTTCGAGTCCAAGGCCAAGTCCTTCGAGAAGACATACCTCAAACGCCACTCCAAGAAGGGCTCGGGCTCCGGCTCGGGCCTGGGCCCGTTGGAGACGGAAACGCTGTTCTGGAAAGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCTAATGACATGCCTGGCTCGGCGTTTTCTCCGAAATGCCGGCGCACAGGGGATCCCAGCTCACTGGCGGACACTCCGTGGAACATGAGAGCGGTTTCAAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCCCCTATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCATGACTTGCACAGCTTGAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGCGACGCCGCCGTCGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATCAACCCGCTCGTTACTTTTGCTATTCTAGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGCGTTCCATGCTGCAGGTTAGTACAAAATGCCGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCGAACATTGCAACACCTGAGTGGCTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGGGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTCCTACAGAACAATGATCTGCTTCATTTTCTTGGGCAAGGATCAGCTGTAGTACTTCTTCCTCGTAGCTCTGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCTATTAATGTAAGCAATTCTGAGGGAATGCATTCTTCAAAAGGTTTTGTTTCTGATGATCTGGCATTCAACAGGAGTCATGGAATCAAGCAAGGAAAAAGTTTCTATTCTGTGAAAGACAAGTTTAGTACGTTGTGTGAAAGGGACAGGATTTCCTCTTTTGATGTAAATGATAACATAAGCATTTCAAGTTCTAATCCACTTCAAAGAGACACTGAAAGAGAAACTTGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTGTGTCAGCTGATTGCAGTTTCTTTAATGATTCGGTTGTTGGTTCTGGAATATCTAAAAATAAATTTACTATTGCCCGTGAAGAAGCAATTATTCCTGAGCCAAATATTTATACAGGATGGATGAAAAAGAATGTCCAAGATGGTATACATGATGTTCCTTTTCAATCTTCTCAGGTTGCTTTAAATATGGTAAGTGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTGCGGTTGACAGTCATGAATCAAATGTGATAAACTCTGCTTCAGAAAGTTTACTTTCTTACACTCGAGATTCCCATGCTAGTCCCATGACTGCACTTGATAGGGGAGATTATATTCCTTCAAAGAGTTCCAGCTATGAGGATTTTATACATCGTAGATTAGAGTGTTTTGAAAACACAAGGACGGTGGCTAATTCCACCTCTAATTGTTCCCAAGATGCTCATAATGCTGAAAGGTCATTGTCTAACAATGCTATGATGGTTCCCTTTGATAATAAAAAAGCTTCGATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTTGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGTGGAGCCAACCTATTGCTCCTATGTCATCCAGACTATCCCAAGATAGAGGCTGAGGCAAAAATGGTGGCAGAAGATTTGGGTATTGATTACATGTGGAAGAATATTGAATACAGTCATGCTTCCAAGGAGGATGAGGAGAAGATCCAGTCAGCTCTGGATAGTGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGCGCAAATCTTAGCCGTTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTCTGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGATTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCGAAAAGAGATTTTGAAGATATTGAGGATGAGAAACTCTTAATAGGGTTGATATTACCTGATGATAAAATTGAAAGATCAGAAAGTACACCCAAAAGCGAAGCTACTAGCAGAAAATCAGGTAAGAAAAGGAAAAAGACAGCAGAGAATGGACGGTTCAGGAAAGGAAGTTATGCTAACAAAAATCTACTTTCAGATAATTCCACTGAAGATAAACCCAACTTGCTTCCAAGGAGCATTCTTCGAAGTAAGAAAGTCAGGCATGTTGAGAGAGACTGTGCTGCTTTGAAAGGGGGTTATTCTCCTCCATATCATCATAGAAAACCTTCAAACAACCAAACAAACTTCACTGAAAGTTATGCAGTTTCTGATGATTCGCTTGATGATGATGATCACATGCAGCAAAGGAGGAATGTTAAAATTGAAAAGGCTAAATTTATGGACAATGATGTGGTTTCAAATGATACGATGGACAATGATTCTGATTGGCAGCAGAGGGAAGACGTTAGCAGCAAGCAAGTTGAAGATACGGAGGGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCAAAGGAAGACTTCCAAAGGCAAGCATCCAAAATACATTGGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCATTTTCAAAAGAGGCAAAAGAGAATTCCTGAAAGCAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGATGACCAACTAGAGCTGAAAATGAAGAAGCAGCAACGGAGGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGTAGATATCAAAGAAAGAATCCTAAAGGCAGACAGGCCACATGTGTAGCAGGGGAAGATCAAATGTCTGATGACCAATTGGAGAATCATTGTCAGAAGCAGCAAACAAGTTTCTATAGGAAAAGGCAAAACAAAGGCATTGAAAGAGAGGTTAAAAATGAAATGTCTGATGACCACTTGGAGGACCATTTTCTGAAGCAGCAGCAAAGATTTCCTAAGAGCAGGCGAAACAAACACACTGATAAAGAAGACACGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCGTAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGAAGACGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCAGCTGAGGAGGACTCTCCGAAGTAAACAAGCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCCCTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGTGCTCTCGGATGCTTGTGAAATCAAAGGCTCCTCAGCAAATTAAACAGCCTTCTCATTTGCCGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAAGAAAATTGAAACACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCAGTTGGCCATGCCAAAATGAAGGATGGGGAAGCCGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCATAAGAGAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTTTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAGATTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG 4719 0.442 MVGVCEGNGEVLAWLKSMPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLAEAGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFSEFESKAKSFEKTYLKRHSKKGSGSGSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRRTGDPSSLADTPWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHFLGQGSAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKGFVSDDLAFNRSHGIKQGKSFYSVKDKFSTLCERDRISSFDVNDNISISSSNPLQRDTERETCQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLVSADCSFFNDSVVGSGISKNKFTIAREEAIIPEPNIYTGWMKKNVQDGIHDVPFQSSQVALNMVSENGNTALALLASAYGNSSDSEEDQIAVDSHESNVINSASESLLSYTRDSHASPMTALDRGDYIPSKSSSYEDFIHRRLECFENTRTVANSTSNCSQDAHNAERSLSNNAMMVPFDNKKASMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGANLLLLCHPDYPKIEAEAKMVAEDLGIDYMWKNIEYSHASKEDEEKIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYSAFGCSSPASSPVEPKVYQRRVNRQKKIVAGKWCGKVWMSNQVHPLLAKRDFEDIEDEKLLIGLILPDDKIERSESTPKSEATSRKSGKKRKKTAENGRFRKGSYANKNLLSDNSTEDKPNLLPRSILRSKKVRHVERDCAALKGGYSPPYHHRKPSNNQTNFTESYAVSDDSLDDDDHMQQRRNVKIEKAKFMDNDVVSNDTMDNDSDWQQREDVSSKQVEDTEGDAISEDSLDVGSLQLQRKTSKGKHPKYIGEEDIISDDQMESHFQKRQKRIPESRQGKYLTGKDIISDDQLELKMKKQQRRNPKSRQAKYLNEEDIASDDQLEGHYRRYQRKNPKGRQATCVAGEDQMSDDQLENHCQKQQTSFYRKRQNKGIEREVKNEMSDDHLEDHFLKQQQRFPKSRRNKHTDKEDTDDLAENNSHLLRRTPKRKQAKCMEDDDMNSDDEMEDDQQLRRTLRSKQAKPKTLQQMKQANSLQAKKQASRPIKQCSRMLVKSKAPQQIKQPSHLPNKQSNNTQEFSLDMEEEEEGGPSTRLRKRATKAQESERKLKHKQTKRKKVKNAAAAKVSVGHAKMKDGEAEYQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ* 1573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1070 1138 - -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1171 1441 - -
Gso4g1619 1572 ProSitePatterns Zinc finger C2H2 type domain signature. 1481 1503 IPR013087 -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1337 1359 - -
Gso4g1619 1572 Gene3D Cupin 14 355 - -
Gso4g1619 1572 ProSiteProfiles Zinc finger C2H2 type domain profile. 1509 1538 IPR013087 -
Gso4g1619 1572 SMART JmjN_1 20 61 IPR003349 -
Gso4g1619 1572 ProSitePatterns Zinc finger C2H2 type domain signature. 1511 1533 IPR013087 -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 979 993 - -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 945 1002 - -
Gso4g1619 1572 Gene3D Classic Zinc Finger 1536 1565 - -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1183 1206 - -
Gso4g1619 1572 SMART cupin_9 182 351 IPR003347 -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1369 1394 - -
Gso4g1619 1572 Pfam JmjC domain, hydroxylase 215 333 IPR003347 -
Gso4g1619 1572 ProSiteProfiles Zinc finger C2H2 type domain profile. 1539 1570 IPR013087 -
Gso4g1619 1572 SUPERFAMILY beta-beta-alpha zinc fingers 1495 1537 IPR036236 -
Gso4g1619 1572 Gene3D Classic Zinc Finger 1507 1535 - -
Gso4g1619 1572 Gene3D Classic Zinc Finger 1477 1506 - -
Gso4g1619 1572 ProSiteProfiles Zinc finger C2H2 type domain profile. 1479 1508 IPR013087 -
Gso4g1619 1572 ProSiteProfiles JmjC domain profile. 175 351 IPR003347 -
Gso4g1619 1572 Coils Coil 1417 1437 - -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1402 1424 - -
Gso4g1619 1572 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1079 1098 - -
Gso4g1619 1572 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 1562 - -
Gso4g1619 1572 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1562 - -
Gso4g1619 1572 ProSitePatterns Zinc finger C2H2 type domain signature. 1541 1565 IPR013087 -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1245 1313 - -
Gso4g1619 1572 SMART c2h2final6 1509 1533 IPR013087 -
Gso4g1619 1572 SMART c2h2final6 1479 1503 IPR013087 -
Gso4g1619 1572 SMART c2h2final6 1539 1565 IPR013087 -
Gso4g1619 1572 SMART c2h2final6 1456 1478 IPR013087 -
Gso4g1619 1572 SUPERFAMILY Clavaminate synthase-like 107 369 - -
Gso4g1619 1572 SUPERFAMILY beta-beta-alpha zinc fingers 1527 1561 IPR036236 -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1015 1035 - -
Gso4g1619 1572 MobiDBLite consensus disorder prediction 1121 1138 - -
Gso4g1619 1572 Pfam jmjN domain 22 55 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1619 Gso-Chr4 45879016 45888885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1619 342 990 C2H2 Transcription Factor Family AT3G48430 45.481 1.77e-161 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g1619 JmjC 1.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1619 - - gmx:100775813 3120.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1619 4 45879016 45888885 Gso6g1468 6 14753876 14764105 GST