Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1618 ATGGTGGGAGTTTGTGAGGGAAACGGCGAGGTTTTGTCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACAGGCCGAGCGCGGCCGAGTTCCAGGATCCAATCGGGTACATATTCAAGATCGAGAAGGAAGCTTCAAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAAACCGCAATCGCCAACCTCAACCGCTCACTCGCGGAAGCCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGCGTCCCGTCTGGCAGAGCGGCGATCGCTACACCTTCAGCGAGTTCGAGTCCAAAGCCAAGTCCTTCGAGAAGACATACCTCAAACGCCACTCCAAGAAGGGCTCCGGCTCCGGCTCGGGCCTGGGCCCGCTGGAGACGGAGACCCTGTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCTAATGACATGCCTGGCTCGGCGTTTTCCCCGAAATGCCGGCACGCAGGGGATCCCAGCACACTGGCGGATACTCCGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCCCCTATGGTCTATGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCACGACTTGCACAGCTTGAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGCGACGCCGCCGTCGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATCAACCCGCTCGTTACTTTTGCTACTCTTGGTGAGAAAACCACAGTGATGTCACCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTGGTGACGTTTCCCAGAGCCTATCACTCAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCAAACATTGCAACACCGGAGTGGTTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTATGTTCTAGTATTCCTGCGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAAAACAATGATCTGCTTCATATACTTGGGAAAGGATCAGATGTAGTACTTCTTCCTCATAGCTCAGTTGACATTTTTGTTTGCCCAAAATTACGTGTTGGATTCCAACAATCCATCAATGTAAGAAATTCTGAGGGAATGCATTCCTCTAAAGGTTTTGTTTCAGATGATGTGGTATTCAGCAGGAGTCAAGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAACTTTACTACATTGTTTGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACATAAGGGCTTCAAGTTCTAATCCACTTCAAAGAGACAATGATAGAGAAACTGGTCAAGGAGATTCGTTATCAGATCAGAGACTGTTTTCATGTGTAACATGTGGAATACTATGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGCTCTGGAGTATCTAGCAATAAATTTACTATTGCCCTTGAAGAAGCAACTATTGCTGAGCCAAACATGTATACAGGATGGATGAAAAAAAATGTCCAAGATGGTATACATGATGTTTCTGTTCAATCTTCTCGGGAGGCTTTAAATACTGAAAGTGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCATCTGACTCTGAGGAAGATCAGATTGCAGATGAGAGTCACGAATCAAATGTGATAAACTCTGCTTCGGAATGTTTACTTTCTCATACTCAAGATTCCTATGCTAGTCCCATGACTGCACTTGACAAAGGAGATGATTTTCCTTCAACGAGTGCCAGTTGTGAGGATGTGCATCGTAGATTTGAGTGTAATTTGAGTCATCAGTCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATACAAGGACAGTGCCTAATTCCACCTCTAATTGTTCCCAACAAGCTCATAATGCTGACAGGTCATTGTCTAACAAGTCTATGGTTGCCTTTGATAATAAAAATACTTCGATGGTGCTACAAGCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAACAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCCTTTGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCAGAAGATCTGGGGATTGATTACATGTGGAAGAAAATTGCATACAGGCACGCTTCCACGGAGGATGAGGAGAGGATCCAGTCGGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATTCATTTGGTTGTAGCTCTCCAGCAAGCTCACCTGTAGAACCAAAGGTATACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGACTCCGAAGATGTTGAGGATGAGAAACTCTTACTTGGGTGGATATTACCTGATGAGAAATTTGAGAGATCAGAAATTACCCTCAAAAGTGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCTGAGAATGGACGACCCAAGAAAGGAAGTTATGCTAAGAAAAATGTAGTTGCAGATAATTCCACTGAAGGTAAACACAACTCACAGCCAAGGAGGATTCTTAGAAATAAGAAAGCTAGGTGTGTTGAAAGAGACCATGCTGCTTTGAAAGGGGATTATTGTCCCCCATATCATCGGAAATCTATAAGCAAGCAAGCAAACTGCTCTGAAAGTGATGCAGTTTCTGATGATTCTCTTGATGATGATGATCACATGCATCATAGGAGGAATGCTATTGTTGAAAAAGACAAATTTATTGACAATGATGTTTCAAACGATACAGTGGACTGTGATTCTGACTGGCAGCAGAGGGAAGAACTTAGCAGCAAGAAAGTTGAAGATACAGAGAGAGTTGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAATTGCTTAGGAAGAATTCCAGAGCCAAGCATGCCAAAAACATAAGTCAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTGCAAAAGCGGCAAAGGAGAATTCCTAAAAGCAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGATGACCAACTAGAGCATAAAAAGAAGAAGCAGCAACGGAAGAATCCTAAAAGCAGGCAAGCCAAATACCTCAATGAAGAGGATATTGCATCAGATGACCAATTGGAGGGCCATTATCGTAGATATCAGAGAAAGAATTCTAGAGGAAGACATGCCAAATGTGTAGCAGGGGAAGATGGCATGCCTGATGACCAATTGGAGGATCGTTGTCAGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAGAGGTTAAAAATGAAATATCTGATGACCACTTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAACAAACACACTGATAAAGAAGTCATGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCCAAAAGGAAGCAAGCTAAATGCATGGAAGAAGATGATATGAATTCAGATGATGAAATGGAAGATAATCAGCCGCTGAGGAGAACACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCAACAGATGAAACAAGCTAATTCCTTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGGGATCTCGGATGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTTCTCATTTGCGGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAGGGAAAATTGAAAGACAAGCAAACAAAAAGGATGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCGGTTGGCGATGCCAGAATGCAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTGGGGTCAAAACAGGAGCTGATGCATCATAAGAGAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTTTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACAGAGCACATTCGAGTCCACACTGGTGCACGACCTTATGTATGTGCTGAGCCAGATTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG 4776 0.4426 MVGVCEGNGEVLSWLKSMPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLAEAGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFSEFESKAKSFEKTYLKRHSKKGSGSGSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGDPSTLADTPWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSSIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSDVVLLPHSSVDIFVCPKLRVGFQQSINVRNSEGMHSSKGFVSDDVVFSRSQGIKQEKSFYSVKDNFTTLFERNRISSFDVNGNIRASSSNPLQRDNDRETGQGDSLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTIALEEATIAEPNMYTGWMKKNVQDGIHDVSVQSSREALNTESENGNTALALLASAYGNSSDSEEDQIADESHESNVINSASECLLSHTQDSYASPMTALDKGDDFPSTSASCEDVHRRFECNLSHQSLDHSLKKQDYNITSGVTFENTRTVPNSTSNCSQQAHNADRSLSNKSMVAFDNKNTSMVLQADEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKMVAEDLGIDYMWKKIAYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYSFGCSSPASSPVEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLLLGWILPDEKFERSEITLKSETTSRKSGKKRKMTAENGRPKKGSYAKKNVVADNSTEGKHNSQPRRILRNKKARCVERDHAALKGDYCPPYHRKSISKQANCSESDAVSDDSLDDDDHMHHRRNAIVEKDKFIDNDVSNDTVDCDSDWQQREELSSKKVEDTERVAISEDSLDVGSLQLLRKNSRAKHAKNISQEDIISDDQMESPLQKRQRRIPKSRQGKYLTGKDIISDDQLEHKKKKQQRKNPKSRQAKYLNEEDIASDDQLEGHYRRYQRKNSRGRHAKCVAGEDGMPDDQLEDRCQKQQTSFSRKRQNKGIDREVKNEISDDHLEDHFLKQHRRFPKSRQNKHTDKEVMDDLAENNSHLLHRTPKRKQAKCMEEDDMNSDDEMEDNQPLRRTLRSKQAKPKTLQQMKQANSFQAKKQASRPIKQGSRMLVKSKAPQQIKQPSHLRNKQSNNTQEFSLDMEEEEEGGPSTRLRKRATKAQESEGKLKDKQTKRMKVKNAAAAKVSVGDARMQDGEAEYQCDIDGCTMSLGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ* 1592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1618 1591 MobiDBLite consensus disorder prediction 970 1026 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1311 1332 - -
Gso4g1618 1591 ProSitePatterns Zinc finger C2H2 type domain signature. 1560 1584 IPR013087 -
Gso4g1618 1591 Pfam jmjN domain 22 55 IPR003349 -
Gso4g1618 1591 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 1581 - -
Gso4g1618 1591 Pfam JmjC domain, hydroxylase 215 333 IPR003347 -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 970 996 - -
Gso4g1618 1591 SUPERFAMILY Clavaminate synthase-like 107 370 - -
Gso4g1618 1591 SMART JmjN_1 20 61 IPR003349 -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1012 1026 - -
Gso4g1618 1591 SUPERFAMILY beta-beta-alpha zinc fingers 1471 1527 IPR036236 -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 509 528 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1388 1413 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1234 1276 - -
Gso4g1618 1591 Gene3D Classic Zinc Finger 1496 1525 - -
Gso4g1618 1591 Gene3D Classic Zinc Finger 1526 1554 - -
Gso4g1618 1591 SUPERFAMILY beta-beta-alpha zinc fingers 1514 1556 IPR036236 -
Gso4g1618 1591 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1557 IPR013087 -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1202 1225 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1047 1070 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1148 1276 - -
Gso4g1618 1591 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1552 IPR013087 -
Gso4g1618 1591 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Gso4g1618 1591 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1581 - -
Gso4g1618 1591 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Gso4g1618 1591 ProSiteProfiles JmjC domain profile. 175 351 IPR003347 -
Gso4g1618 1591 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Gso4g1618 1591 Gene3D Cupin 14 355 - -
Gso4g1618 1591 ProSiteProfiles Zinc finger C2H2 type domain profile. 1558 1589 IPR013087 -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1148 1164 - -
Gso4g1618 1591 SUPERFAMILY beta-beta-alpha zinc fingers 1546 1580 IPR036236 -
Gso4g1618 1591 Gene3D Classic Zinc Finger 1555 1584 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1421 1452 - -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1311 1456 - -
Gso4g1618 1591 SMART cupin_9 182 351 IPR003347 -
Gso4g1618 1591 MobiDBLite consensus disorder prediction 1356 1378 - -
Gso4g1618 1591 SMART c2h2final6 1528 1552 IPR013087 -
Gso4g1618 1591 SMART c2h2final6 1475 1497 IPR013087 -
Gso4g1618 1591 SMART c2h2final6 1558 1584 IPR013087 -
Gso4g1618 1591 SMART c2h2final6 1498 1522 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1618 Gso-Chr4 45864039 45874247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1618 778 879 C2H2 Transcription Factor Family AT5G04240 34.314 4.21e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g1618 JmjC 3.4e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1618 - - gmx:100775271 3157.08