Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1614 ATGGCATCAAGCGAGGGGTTTCTGACCGATGGACAGAGAGAGATTCTGAAAATAGCGAGTCAGAATGTGGAGAATTTGTCTTCCTCGCCGAAATCTCCATCCTCCTTGCTTGCTGAACATCATCATCACGTGAGGGCTCCTTCAGGGGGTGGTAAGGCACAGACTGCTGGGCATGCTGCCAGGAATGTGCGCCGGTCGCACTCCGGAAAGTATGGGAGGGCGAAGAAGGACGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACAGATGGTGAATCCCGTATAGACAAGAACGATCCAAACTATGATAGCGGCGAGGAACCTTATCAACTGGTGGGATCTACTGTTACTGATCCTTTAGATGACTTCAAGAAAGCCGTAGTATCCATCATAGAGGAATATTTCAGTAATGGGGATGTCGACTTGGCCGCATCTGATCTCAGAGAACTTGGATCAAATAAATATTATCCATACTTCATTAAGCGTCTTGTATCCATGGCCATGGATAGGCATGATAAAGAGAAAGAGATGGCTTCAGTTCTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTAGAGATGGGTTTTTTATGCTTATTGAATCTGCTGATGATCTTGCAGTGGACATACTGGATGCAGTTGACATCCTTGCTTTATTTCTGGCACGTGCTGTTGTGGATGACATCATTCCTCCAGCCTTTCTTGCCAGGGCCAAGAAGGCTCTTCCAGAATCTTCTAAGGGAGTTCAAGTAATCCAGACTGCTGAAAAAAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGATGTGAAGAAGAGGATTGCTGATTTACTAAGAGAATATGTGGATAGTGGTGACACATTAGAAGCCTGTAGGTGCATACGGGAATTGGGGGTTTCATTCTTTCATCATGAGGTCGTGAAGAGGGCCTTGGTACTTGCCATGGAGATCCATTCGGCAGAACCTCAACTGTTGAAGCTATTAAAAGAAGCAGCTGAAGAGGGACTTATTAGTTCCAGCCAAATGGTGAAAGGATTTTCTCGTTTGGAAGAAGTCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAACTCAGTTTCAGTCATTGGTGCCTAAGGCAATATCAGAAGGGTGGCTTGATGCCTCATTTTTGAAACCATCTAGTGAAGATGGGGATATAGTAGTTGAAGATGAAAAGGTGAGGAAGTATAAAAAAGAGGTTGTAACTATAATTCATGAATATTTTCTTTCTGATGACATTCCTGAACTCATTCGAAGTCTTGAAGATCTTGGGGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGACAGAAAGAACAAGGAAAAGGAAATGGCATCAGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTAGATATATTGGATGCATCAAATGAGCTTGCTCTTTTCTTAGCACGAGCTGTGATTGATGATGTATTGGCTCCTCTGAATTTAGAGGAAATTAGCAGCAAGTTGCCTCCAAAATGCAGTGGTAGTGAAACTGTACGGATGGCTAGATCACTTGTTGCTGCTCGTCATGCTGGTGAGAGACTATTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTTGAAGATGCCAAGGACAAAATCATGAAGCTCTTGGAGGAGTACGAGAGTGGAGGTGTTGTGAGTGAAGCATGCCAGTGTATCCGTGACCTGGGAATGCCTTTCTTCAACCACGAGGTTGTCAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGATCTGCTGCAGGAATGTTTCAGTGAAGGTCTAATAACCATCAATCAGATGACCAAAGGGTTCACCAGAATCAAGGACGGTCTTGATGATCTCGCTCTGGACATTCCAAACGCTAACGAGAAATTCAGCTTCTATTTGGAGCATGCCCTGAAGAAGGGCTGGCTCCTACCATCATTTGATTCCACTGCCACAGATGTCTAA 2118 0.4448 MASSEGFLTDGQREILKIASQNVENLSSSPKSPSSLLAEHHHHVRAPSGGGKAQTAGHAARNVRRSHSGKYGRAKKDGAGGKGTWGKLLDTDGESRIDKNDPNYDSGEEPYQLVGSTVTDPLDDFKKAVVSIIEEYFSNGDVDLAASDLRELGSNKYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDIIPPAFLARAKKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEDVKKRIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIHSAEPQLLKLLKEAAEEGLISSSQMVKGFSRLEEVLDDLALDIPSAKTQFQSLVPKAISEGWLDASFLKPSSEDGDIVVEDEKVRKYKKEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNKEKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPKCSGSETVRMARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNANEKFSFYLEHALKKGWLLPSFDSTATDV* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1614 705 ProSiteProfiles MI domain profile. 585 704 IPR003891 -
Gso4g1614 705 ProSiteProfiles MI domain profile. 124 245 IPR003891 -
Gso4g1614 705 PANTHER PROGRAMMED CELL DEATH 4 1 697 IPR039778 GO:0045892
Gso4g1614 705 SMART ma3_7 586 695 IPR003891 -
Gso4g1614 705 SMART ma3_7 289 400 IPR003891 -
Gso4g1614 705 SMART ma3_7 423 534 IPR003891 -
Gso4g1614 705 SMART ma3_7 125 236 IPR003891 -
Gso4g1614 705 Gene3D - 275 407 - -
Gso4g1614 705 Gene3D - 573 702 - -
Gso4g1614 705 SUPERFAMILY ARM repeat 582 699 IPR016024 -
Gso4g1614 705 Pfam MA3 domain 290 400 IPR003891 -
Gso4g1614 705 Pfam MA3 domain 125 236 IPR003891 -
Gso4g1614 705 Pfam MA3 domain 424 533 IPR003891 -
Gso4g1614 705 Pfam MA3 domain 587 694 IPR003891 -
Gso4g1614 705 SUPERFAMILY ARM repeat 420 578 IPR016024 -
Gso4g1614 705 SUPERFAMILY ARM repeat 123 282 IPR016024 -
Gso4g1614 705 MobiDBLite consensus disorder prediction 19 35 - -
Gso4g1614 705 SUPERFAMILY ARM repeat 285 406 IPR016024 -
Gso4g1614 705 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Gso4g1614 705 Gene3D - 415 565 - -
Gso4g1614 705 Gene3D - 117 265 - -
Gso4g1614 705 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 697 - -
Gso4g1614 705 ProSiteProfiles MI domain profile. 288 409 IPR003891 -
Gso4g1614 705 MobiDBLite consensus disorder prediction 19 110 - -
Gso4g1614 705 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1614 Gso-Chr4 45833985 45837937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1614 589 681 Eukaryotic Initiation Factors Gene Family AT5G57870 32.292 5.33e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1614 - - gmx:100815729 1326.61