Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1603 ATGGGGGAAGGTAGTACTAGTACTAGAGATATGAGCACCGATAAAATAAATGTTGATTTAAATGAATATCCAATTGAAGATATTTCTTTAGAGAATGGTTATTCAGGAACAGTTAGTGAACATTTTGATCATGATATTGTGGCAAATGATGTATTAGAAGTTGAGGAAATTGAAACTTATGAGAAAGAAAATATTGTGTCTTCTAGTCAGAATATTGAGATAAATGAATTTGCAGAAGAAGTTGATAGAGATGAAACTTATAATGAGACAAATATTGTTCCTTTTGTTGGTCAAATTTTTCTTAGCGAGGAAGAAGCATTTGCATTTTATAAGAGGTATGCATATCAGCATGGGTTCTCTGTTCGAAAAGGTAGATTCATCAAACGAAATGGAATTATGAGGAGGCGTGATTTTTTTTGCCATCGTGAAGGTAGAAGCTCGTTGAAAATCATAGAACCATTAAAAGAACAGAGAAACAGAGAATCAACAAGGTGTGAATGTAAAGCTTATTTAAGAATTTCATTGCAGAAGTCTCATGATATATTTCCAAGTGAGTGGCGAGTTACAAAGTTTGTTGTTGAACATAACCATGTTTTGCTAACCCAATCAGAAGTGCGTTTTTTACCGGCTAACCGAACTATCTCTGAAGATGATATTGAACGCATTTTCTTGTTAAAAGAAGGGGGGCTTTCAGTTAGACAATTGATGCGTGTCATAGAATTAGAGAAAAATGTGAAGCATGGTTATCTTCCATTTATTGAAAGGGACATTCGTAATCTTTTTGTGAAAACCAAGAAAAAAGTTGAAAGAAATGATGCCAAAGATCTTCTCAAGTACTGTGAGGATGCAAAAAAGAGTTGCTCTAAATTTCAGTATGCATATACACTTGATGAAGAGAGAAGGTTAGAGCATATTTTTTGGTCTCCTGCTTCTTGCTCTGATTGGTACCAAAAATATGGTGATGTTGTTGTGTTTGATACTACATACAAGGTCAATTCTTATGAAATGCCATTTGGGATTTTTGTGGGTATGAATAGTCATGGGAAGACTGTACTTTTTGGTTGTGCACTCTTACGAAATGAAACAATATCTGCATTTCGTTGGTTAATGAAGACTTTTATATCTTTGATGAAGAAGCCACCAAAGACTATACTAACGGATCAAGATCCATGGATGAAAGAAGCAATTTCAAAAGACTTGCCATCAACAAAACATAGTTTTTGCATATGGCACATCACTTTTAAGTTTAGTAGTTGGTTTAATGCTATACTTCGGGACAAATATTCAAAATGGTGTTCTGATTTTTACGAGTTGTATAAATTGGAGACATGTGAAGAATTTGAGCATCAATGGCCAAAAGTTGTTGCTAAGTATAACTTGCAGTCAAATAAACATGTGAAAGGATTGTATGAAATCAGGAATTACTGGGCACTCGCTTATCTTCGTGACCATTTCTTTGGTGGGATGACAACTACCGGAAGATCAGAGAGTATTAATGCATTTATTAAAAGATTTATAAATTCTCACACAAGTTTAAGTGACTTTACAAAGCAGGTTGATGTAGCGATTGATGATATTAAGCAAAAAGAAGACCATGACATAATGTTAGAAAAGTGCAAAAGAATTAACTTGAAGCTTATGTCACCCTTGCAAGAGCAAGCTCATGGTGTTCTTACAAGATTTGCTTTTCAGAAGTTTCAAGAGGAGTTTGAAAGGTCCACCCAATATTCAATTCATCATGAAAATGGTAATGAATTTGTGTTGCGGTATTATAAAGATGCTAATAGTAGAAAACACATGGTCTTTTGGGATGGTAAAATAGCTACATGTAGTTGCAAGTATTTTGAGTTTTGGGGTATATTATGTCGTCACATTCTCAGTATTTTTCTTCATAAAGATTGTCATGAAATCCCTTCTAACTACTTGCCATCACGATGGCGGCTTCAAACATCACATGACGATGATGAAGTAGATCCCCAACAAGTCAATGTTGTCTTTGAGGAACAAGTCGATGTTGTTCACTGTCCTCCACCTTCCAAAACAAAAGGTCGTCCCAAACGAAGACGTCTTAAAGGTGGAAAAGAGCTATCACATAACATGAATACTTGTGGATTGTGCAAAGATGTAGGACATAATATTGTTACATGTCCTCTAAAAGAAAATACTCAATTTTCTGGTCACACAAACAAGAAGAAAAAAATTTGTAAAGATGCAAATTTAAATCCAATTCTTCTTCCAAAAGTTTAG 2247 0.3449 MGEGSTSTRDMSTDKINVDLNEYPIEDISLENGYSGTVSEHFDHDIVANDVLEVEEIETYEKENIVSSSQNIEINEFAEEVDRDETYNETNIVPFVGQIFLSEEEAFAFYKRYAYQHGFSVRKGRFIKRNGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKSHDIFPSEWRVTKFVVEHNHVLLTQSEVRFLPANRTISEDDIERIFLLKEGGLSVRQLMRVIELEKNVKHGYLPFIERDIRNLFVKTKKKVERNDAKDLLKYCEDAKKSCSKFQYAYTLDEERRLEHIFWSPASCSDWYQKYGDVVVFDTTYKVNSYEMPFGIFVGMNSHGKTVLFGCALLRNETISAFRWLMKTFISLMKKPPKTILTDQDPWMKEAISKDLPSTKHSFCIWHITFKFSSWFNAILRDKYSKWCSDFYELYKLETCEEFEHQWPKVVAKYNLQSNKHVKGLYEIRNYWALAYLRDHFFGGMTTTGRSESINAFIKRFINSHTSLSDFTKQVDVAIDDIKQKEDHDIMLEKCKRINLKLMSPLQEQAHGVLTRFAFQKFQEEFERSTQYSIHHENGNEFVLRYYKDANSRKHMVFWDGKIATCSCKYFEFWGILCRHILSIFLHKDCHEIPSNYLPSRWRLQTSHDDDEVDPQQVNVVFEEQVDVVHCPPPSKTKGRPKRRRLKGGKELSHNMNTCGLCKDVGHNIVTCPLKENTQFSGHTNKKKKICKDANLNPILLPKV* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1603 748 Pfam FAR1 DNA-binding domain 109 200 IPR004330 -
Gso4g1603 748 Pfam MULE transposase domain 322 413 IPR018289 -
Gso4g1603 748 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 66 648 - -
Gso4g1603 748 SMART 26again6 608 635 IPR006564 GO:0008270
Gso4g1603 748 Pfam SWIM zinc finger 601 632 IPR007527 GO:0008270
Gso4g1603 748 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 648 IPR031052 GO:0006355
Gso4g1603 748 ProSiteProfiles Zinc finger SWIM-type profile. 590 633 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1603 Gso-Chr4 45672984 45675645 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso4g1603 MULE 1.4e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1603 - - gsj:114409893 1524.99