Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1601 ATGTCTATCACTTCTTCCACTTCCTTCAAGTCCCTCACTATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCAACAACAAAACCAAACCCTCTCTATTCTCACCCCCCTCCAAACCCCTCACACTCCAATTCTCATGCATCAACTCCTCAGTCTCTCTCTCCCTCGCCGCGCGAGCTCACCGCTCTCCCCTCGTCACGCGCGTGGCCCAAACTTCCGATTGGGCCCAACAAGAAGAAGACGACACCGCCACCTTCCAAGACGAAGAACAGGGCCTTAGTGAAACCCAAGCGGGCCTTTCCAGTTGGGAGCCCAACGGCGAAGACGCCGGAGAAGAGAGCTTCGCCGAACCGCCGGAAGAGGCAAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAACAAGCCGGAACCGTTGAAATCGCCGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACGATGAGTACCGTTGAAGAAGCTGAGAACGCCGTGGAGAAATTCAGTCGTTACGATTTTGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCGGAACGCCCGCCGCCTCGTCACTCCTTTGAGCCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGATAATACCCGGCTGGAGCAAATTTTCAGTGAACATGGTAATGTGGTGAATGCTCGGGTAGTCTATGACAGGGAGACTCGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACGGAAATGAAAGATGCGGTTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGCCAATTAGGGTGAGTGTTGCCGAGGACAGGCCAAGGCGTGGTTCCTTTTGA 918 0.5207 MSITSSTSFKSLTMAESCLLSSPSSLFNNKTKPSLFSPPSKPLTLQFSCINSSVSLSLAARAHRSPLVTRVAQTSDWAQQEEDDTATFQDEEQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKASPRGTRPERPPPRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVSVAEDRPRRGSF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1601 305 Gene3D - 209 305 IPR012677 -
Gso4g1601 305 SUPERFAMILY RNA-binding domain, RBD 120 213 IPR035979 GO:0003676
Gso4g1601 305 PANTHER RIBONUCLEOPROTEIN 1 94 - -
Gso4g1601 305 PANTHER RIBONUCLEOPROTEIN 109 305 - -
Gso4g1601 305 MobiDBLite consensus disorder prediction 73 120 - -
Gso4g1601 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Gso4g1601 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 195 IPR000504 GO:0003723
Gso4g1601 305 Gene3D - 70 208 IPR012677 -
Gso4g1601 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Gso4g1601 305 SMART rrm1_1 125 198 IPR000504 GO:0003723
Gso4g1601 305 MobiDBLite consensus disorder prediction 91 105 - -
Gso4g1601 305 CDD RRM_HP0827_like 125 202 - -
Gso4g1601 305 SUPERFAMILY RNA-binding domain, RBD 210 303 IPR035979 GO:0003676
Gso4g1601 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Gso4g1601 305 CDD RRM_HP0827_like 222 297 - -
Gso4g1601 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Gso4g1601 305 PANTHER OS02G0815200 PROTEIN 1 94 - -
Gso4g1601 305 PANTHER OS02G0815200 PROTEIN 109 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1601 Gso-Chr4 45662882 45665948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1601 126 305 Eukaryotic Initiation Factors Gene Family AT3G16380 26.111 1.00e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1601 - - gmx:100810381 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1601 4 45662882 45665948 Gso6g1479 6 14910458 14913166 GST
Gso5g0363 5 3807516 3810163 Gso4g1601 4 45662882 45665948 PCT
Gso17g1060 17 10045885 10048296 Gso4g1601 4 45662882 45665948 PCT
Gso4g1601 4 45662882 45665948 Gso5g0363 5 3807516 3810163 PCT
Gso4g1601 4 45662882 45665948 Gso17g1060 17 10045885 10048296 PCT