Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1588 ATGGCAGTTTCTTCTGCATCAGCTTCCTCCAAACTTATACTATTCCCCCATGCTTCATCTTCTTCCCTTATCTCCACACCCTTCCGTTCCTCCACCAACACCCACAAACTATCCCCTCTCTCCTCCTCCTTCCTCCACCCCACCACCGTCCTCCGCCGCACCCCCTCCTCCACCACTACCACCACCTCCCCGCGCCGCCCCCTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGCCACGTGGACCACGGCAAGACCACCCTGACCGCCGCCCTCACCATGGCCCTTGCCGCCCTCGGCAACAGCGCCCCGAAGAAGTACGACGAGATCGACGCCGCCCCGGAGGAACGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTTGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCTTAGCCAAGCAAGTCGGTGTCCCCAACATGGTCGTCTTCCTCAACAAGCAAGACCAAGTCGACGACGAAGAGCTTCTCCAACTAGTCGAACTCGAAGTTCGCGACCTTCTTACCTCCTACGAATTCCCCGGTGACGATACCCCCATCGTCTCCGGCTCCGCACTCTTAGCCCTAGAAGCCCTTATGGCGAACCCTGCCATCAAACGCGGCGACAACGAGTGGGTCGACAAAATCTACAAACTCATGGACGAAGTCGACGACTACATTCCCATCCCCCAGCGCCAGACCGACCTCCCATTCCTCCTCGCCGTCGAAGACGTTTTCTCCATCACCGGCCGTGGGACCGTCGCCACCGGCCGCGTCGAGCGTGGCACCGTCAAAGTAGGGGAAACTGTTGACCTTGTAGGATTGAGAGAGACAAGAAACACAACGGTCACAGGTGTGGAAATGTTCCAGAAGATTCTAGACGAAGCCCTCGCCGGGGACAACGTGGGGCTGTTGCTGAGAGGGGTTCAAAAGACGGACATCCAGAGAGGGATGGTGTTGGCGAAGCCTGGCACGATTACGCCGCACACCAAGTTCTCAGCGATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGGAGACATTCACCTTTCTTTGCAGGGTATAGGCCTCAGTTTTACATGAGGACCACCGATGTGACTGGGAAGGTTACGGCTATCACCAACGATAGGGATGAAGAGTCGCAGATGGTGATGCCCGGTGACCGTGTGAAGATGGTGGTGGAGCTCATTGTGCCTGTGGCTTGCGAACAGGGAATGAGGTTTGCTATTAGGGAAGGTGGCAAGACCGTTGGTGCAGGTGTTATCCAATCCATCATTGAGTGA 1443 0.5849 MAVSSASASSKLILFPHASSSSLISTPFRSSTNTHKLSPLSSSFLHPTTVLRRTPSSTTTTTSPRRPLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRDLLTSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIYKLMDEVDDYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1588 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 307 IPR027417 -
Gso4g1588 480 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 379 479 IPR009001 -
Gso4g1588 480 TIGRFAM EF-Tu: translation elongation factor Tu 73 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gso4g1588 480 CDD EFTU_II 292 378 IPR033720 -
Gso4g1588 480 Pfam Elongation factor Tu GTP binding domain 81 282 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 Gene3D Translation factors 287 415 - -
Gso4g1588 480 MobiDBLite consensus disorder prediction 27 65 - -
Gso4g1588 480 CDD EFTU_III 381 475 - -
Gso4g1588 480 Hamap Elongation factor Tu [tuf]. 72 480 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gso4g1588 480 PANTHER ELONGATION FACTOR TU-RELATED 34 480 - -
Gso4g1588 480 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Gso4g1588 480 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 PRINTS GTP-binding elongation factor signature 165 176 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 Pfam Elongation factor Tu domain 2 306 374 IPR004161 GO:0005525
Gso4g1588 480 PANTHER ELONGATION FACTOR TU 34 480 - -
Gso4g1588 480 Pfam Elongation factor Tu C-terminal domain 379 478 IPR004160 -
Gso4g1588 480 TIGRFAM small_GTP: small GTP-binding protein domain 84 216 IPR005225 GO:0005525
Gso4g1588 480 Gene3D Translation factors 419 479 - -
Gso4g1588 480 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 285 IPR000795 GO:0003924|GO:0005525
Gso4g1588 480 Gene3D - 73 284 IPR027417 -
Gso4g1588 480 SUPERFAMILY Translation proteins 286 382 IPR009000 -
Gso4g1588 480 CDD EF_Tu 82 284 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1588 Gso-Chr4 45500020 45502035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1588 79 478 Eukaryotic Initiation Factors Gene Family AT5G60390 29.888 1.21e-45 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1588 4 45500020 45502035 Gso6g1494 6 15042901 15044796 GST
Gso5g0353 5 3696911 3698763 Gso4g1588 4 45500020 45502035 PCT
Gso17g1050 17 9955079 9958305 Gso4g1588 4 45500020 45502035 PCT
Gso4g1588 4 45500020 45502035 Gso5g0353 5 3696911 3698763 PCT
Gso4g1588 4 45500020 45502035 Gso17g1050 17 9955079 9958305 PCT