Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1579 ATGGAATCCAAACCCGCTCAAACTATCAAGCTTCTCTGTAGCTACGGCGGCAAGATTCTCCCACGCGCCACCGACGGCGAACTCCGTTACGTCGGCGGCCACACCAGAGTCCTCACCGTCGACCGTTCCATTTCCTTTCCAGAATTGATGGTGAAGCTACGCGTATTTTGTGGTTCGTCTGTGATCTTGCGGTGTCAATTACCCAAGGGAGACTTGGAGACCTTGATATCCATCACCAACGACGAAGATCTCGCTAGCATAATCGAAGAATACGACCGTTCCTCGTTGAAATTGGCGCATCCGTTGAAGATCAAAGCCGTTCTCTCGCCGCCGAAATCGATGAAGAAAGCTTCGCCTGTTCCATCGTCGGCGTCGGCGTCGTCCAGCGCCACACACTCTCCGTCCGGATCGCCGCACACCTCCACCGAATCGCTGCCGTACGCGGCGTTCCACCGCATCGGCCGCCACAACCGCCCGCCGGTTGTGTATGCTATCGGCGCGGCGAAGGCATGTTGCTACACGCAGTTCGATGGGAGCCCTAGGTTCCTGTACCGTGGACCTCACTGCAATTATTACTGCCACTGA 585 0.5641 MESKPAQTIKLLCSYGGKILPRATDGELRYVGGHTRVLTVDRSISFPELMVKLRVFCGSSVILRCQLPKGDLETLISITNDEDLASIIEEYDRSSLKLAHPLKIKAVLSPPKSMKKASPVPSSASASSSATHSPSGSPHTSTESLPYAAFHRIGRHNRPPVVYAIGAAKACCYTQFDGSPRFLYRGPHCNYYCH* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1579 194 MobiDBLite consensus disorder prediction 116 143 - -
Gso4g1579 194 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Gso4g1579 194 MobiDBLite consensus disorder prediction 110 143 - -
Gso4g1579 194 SUPERFAMILY CAD & PB1 domains 25 114 - -
Gso4g1579 194 CDD PB1_UP2 12 99 - -
Gso4g1579 194 PANTHER PB1 DOMAIN PROTEIN 1 194 - -
Gso4g1579 194 SMART PB1_new 23 102 IPR000270 GO:0005515
Gso4g1579 194 PANTHER OS05G0427100 PROTEIN-RELATED 1 194 - -
Gso4g1579 194 Gene3D - 29 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1579 Gso-Chr4 45406974 45408096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1579 9 93 MAP Kinase Kinase Kinase AT5G57610 48.235 7.48e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1579 - - gmx:100810563 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1579 4 45406974 45408096 Gso6g1502 6 15135051 15136371 GST
Gso17g0715 17 6565079 6568652 Gso4g1579 4 45406974 45408096 PCT
Gso4g1579 4 45406974 45408096 Gso17g0715 17 6565079 6568652 PCT