Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1576 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGCTTATGGTCCCCCGAAGAAGATGAGAAGCTTTTCAACTACATAACCAGATTTGGCGTTGGCTGCTGGAGCTCCGTTCCCAAACAAGCCGGACTCCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGTCTTCATGAAGTTCAAGGAAATAGGTGGGCTCAAATTGCAGCTCAATTACCAGGGAGAACAGATAATGAGATTAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCAACACACAAGCCTCTCCTCAGTGCTCAAGAACACATAATTATAAAGGAAGAGAAGGAAACCATTTTGGAGACACCACCACCTATGTTATTACCAATGTCTCAAGGGATTTTAGCTTCCTCACAAGAGTCACCACTTGTAGTGAACAATTCAAGTTACTGTGATGGTGGATTAAATGTAACAGAAGCTGCTTCAAGGGAAGTTTTCATGAGCAAGAATGCTGCTTTAGACCCTTTGTCCTACTTTGAATTCCAAATGGGTTACAACCCAATAAGACAATTTGATCAGAACCATGTGGGGACCAACTCAAGCTATGGATTCTCCTCATTGCCGTGTCTGAATAGTTCTTCTGATCACGGGAACGTGTCGGTGGCGGCGGAGTTTTCAGATAACAACTCAGCTTCAAAAATCAGTTCTTTGATGAAGGAAAGTTCCAGCAATAGCTCAAGTATGAGTGTTTATCCAGCTGGGGGAGGGTGTCAAATGATGGAAAATGCAGGGTTCTCATGGGATGGTGAGAACGATAATACTAAGATCGATCCTTTGTTACAGTTCCATGTCAATGTGCTAAAATCTGAAGAGTTCAAGACAAGTTCGTGGCAAGAAGAGCAGATTCTGACTCAGAATTTGATAGATTTCACTAACTATCCGTTAATGTCACTGTCTGAGGATCTAACCGGAGCAAATTTTGATGTGTTCCAGCAGATGTGA 1080 0.4185 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVQGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLSAQEHIIIKEEKETILETPPPMLLPMSQGILASSQESPLVVNNSSYCDGGLNVTEAASREVFMSKNAALDPLSYFEFQMGYNPIRQFDQNHVGTNSSYGFSSLPCLNSSSDHGNVSVAAEFSDNNSASKISSLMKESSSNSSSMSVYPAGGGCQMMENAGFSWDGENDNTKIDPLLQFHVNVLKSEEFKTSSWQEEQILTQNLIDFTNYPLMSLSEDLTGANFDVFQQM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1576 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso4g1576 359 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso4g1576 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso4g1576 359 PANTHER MYB TRANSCRIPTION FACTOR 1 355 - -
Gso4g1576 359 CDD SANT 70 109 IPR001005 -
Gso4g1576 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso4g1576 359 PANTHER MYB DOMAIN PROTEIN 55 1 355 - -
Gso4g1576 359 CDD SANT 17 61 IPR001005 -
Gso4g1576 359 Gene3D - 69 116 - -
Gso4g1576 359 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso4g1576 359 Gene3D - 11 67 - -
Gso4g1576 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso4g1576 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso4g1576 359 SMART sant 66 114 IPR001005 -
Gso4g1576 359 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1576 Gso-Chr4 45341361 45343334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1576 1 129 MYB Transcription Factor Family AT4G01680 85.271 5.77e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g1576 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1576 K09422 - gmx:100799243 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1576 4 45341361 45343334 Gso6g1507 6 15200977 15202958 GST
Gso5g0343 5 3614121 3616011 Gso4g1576 4 45341361 45343334 PCT
Gso4g1576 4 45341361 45343334 Gso5g0343 5 3614121 3616011 PCT