Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1573 ATGGCATCATCAAGCTCCTACAATTCTCCATGTGCAGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCCGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCCAACGTGCACAAGATCTTCGGTGCCAGCAATGTGACGAAGCTCCTCAATGAACTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCTCTTGCATATGAAGCCGAGGCACGCGTGAGAGACCCCGTTTATGGTTGCGTAGGTGCCATATCTTTCCTCCAGAGACAAGTCCAAAAGCTCCAGAAGGAGCTTGATTCCGCAAATGCTGATCTCCTTCGCTTTGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATCCCCCAAAGGTCTTTTAGTGCAAGGTTTGGTAATAATAATGAATCAGCAAGTGGAGGAGAGTTCTATAGGCCTTCTCCTACCACCACTTACTCTTACCCTTATTCTCTTCCATGGACTGATACCTCTTCTGAGGATATCAATGATGGAGGAGGTAACTTGTGA 549 0.4845 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQKLQKELDSANADLLRFACNDMPPPSLSVPPQIPQRSFSARFGNNNESASGGEFYRPSPTTTYSYPYSLPWTDTSSEDINDGGGNL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1573 182 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gso4g1573 182 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Gso4g1573 182 MobiDBLite consensus disorder prediction 163 182 - -
Gso4g1573 182 Coils Coil 89 116 - -
Gso4g1573 182 PANTHER ELONGATED PETIOLULE 1 1 179 - -
Gso4g1573 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1573 Gso-Chr4 45268377 45270803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1573 1 182 AS2 family AT5G63090 61.307 2.00e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso4g1573 LOB 3.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1573 - - gmx:100800614 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0341 5 3570233 3572720 Gso4g1573 4 45268377 45270803 PCT
Gso17g0726 17 6675054 6677438 Gso4g1573 4 45268377 45270803 PCT
Gso4g1573 4 45268377 45270803 Gso5g0341 5 3570233 3572720 PCT
Gso4g1573 4 45268377 45270803 Gso17g0726 17 6675054 6677438 PCT