Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1565 ATGTTCTCTTCTTCTTCTTCTTCTTCTTTTTTCGTGGTTTTCTCGGGGCAGAACCAGAAGCAGAAGCAGGTTGTGAAGTGTGAGAGAGGGATGAGTATGGGTCCCATCAACATAAAGGGTGAAATAGAGAGAGTGAATGGGAAGGAACTGAGTTACAGTGAATTTGTGAAGAGATATATGGAGAAGAACCAGCCAGTGGTGCTCACTGGCCTAATGGACCCTCATTATTGGAGGGCTTCCACTGATTGGGTCACCCTTCAGGGCCAACCCAACTTTCAATATTTCTCCACTCACTTTGGTGCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGATGGTATCAGATTTTATAGCACGGTGCCTTCAACTTGAGGAGGCTTCTGCTGTTCAGTGTTATAATGAAAATAGTTCAAGTAATGGTCCCTCTATATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATGTAGCGTACATCACTCCAATGTTCTTTTGCGATGACTGGCTCAACCTGTATCTGGACAACTTCAGAATACATATTGATTCTGGCACACAACAACCAGATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAACTTGTGTATATAATATCTTTGATGAAGTATCAAACTCAAAGTTTCCTGGTTTTAGCAAGGCTATCTGGTTAGAATGCACACAAAATGCAGGTGAAATTATATTTGTTCCAAGTGGATGGTATCATCAGGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATCTCGAACTTTGCCTTGGCCAACTTGGTGTTGCTTCGTTATATGAATAGAAGATATGGAAATGGCACTGGAAGTTCATCAACAATATCTCAGCATTTGTCCATGAATCTTGGGTGTTTAAGGAAGATTGCATCAGAGATGAAAAGCATGCATGCTCTAGAAGGAAATCATGATTATGTTGTGGATATGATTGAAGCATTTAAAGATCCTAGGTTTTCCAAATTATGCATGCATGTAGGAAGAACATATATAATGATACAAGAGCAATCTTACTTGTCCTTGGATTTTGAGAGCACTTCAATGTGTGATTTGGTGGACCTCAATGATATGAAATCATACACATCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGGTGTTGCAGAACTGGGTGACTGTTTCATTGAGGAGCAACCTATACTCCATGTTGCTTGA 1575 0.3956 MFSSSSSSSFFVVFSGQNQKQKQVVKCERGMSMGPINIKGEIERVNGKELSYSEFVKRYMEKNQPVVLTGLMDPHYWRASTDWVTLQGQPNFQYFSTHFGASKVQVADCDTREFTDQKREEMMVSDFIARCLQLEEASAVQCYNENSSSNGPSISVPYLKDWHFVKEYPEYVAYITPMFFCDDWLNLYLDNFRIHIDSGTQQPDEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRNMKTCVYNIFDEVSNSKFPGFSKAIWLECTQNAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISNFALANLVLLRYMNRRYGNGTGSSSTISQHLSMNLGCLRKIASEMKSMHALEGNHDYVVDMIEAFKDPRFSKLCMHVGRTYIMIQEQSYLSLDFESTSMCDLVDLNDMKSYTSQIYTPEDLIKFIDNGVAELGDCFIEEQPILHVA* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1565 524 Gene3D Cupin 14 321 - -
Gso4g1565 524 SMART cupin_9 157 337 IPR003347 -
Gso4g1565 524 ProSiteProfiles JmjC domain profile. 157 337 IPR003347 -
Gso4g1565 524 SUPERFAMILY Clavaminate synthase-like 37 349 - -
Gso4g1565 524 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 37 509 - -
Gso4g1565 524 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 37 509 - -
Gso4g1565 524 Pfam Cupin-like domain 54 320 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1565 Gso-Chr4 45154867 45159362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1565 40 329 Glycosyltransferase AT1G78280 25.084 2.32e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso4g1565 Cupin_8 4.6e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1565 - - gsj:114409851 1090.1