Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1557 ATGGAGAAGAGCCTCTACGACTTTTACTGTTCAGCCACTTACTCAGACGAGTCAACAATGGCTCCATTTGCGCCGTCTAACAAGCCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGTACTTCGTGCTAAAGTTGCTTCCCATCCTCTATTTCCTCACCTCCTTCATGCCTACATGGATTGCCACAAGGTGGGAGCGCCGCAAGATGTGGCACACCTATTAGAAGGAATCAAAGGAGAGCATACATCTGGGGTGTGTCAGATATCTGAATCTGAAGGCTTCTTGGGTACGGATCCCGAGCTTGATGATTTCATGGGAACGTTTTGCGATTTATTGGTGAAGTACAAATCAGATCTTTTAAAGCCCTTTAACGAGGCAACAATGTTCCTCAACCTCATGGAAACTCAGCTTCACTCCATCTGTAACAACACTCCTCCTCAACCTGATGAAGTTACTCATGGATCACCTGGAAAAGATCTTAGTAGGGTGAAGAAAGAGGCAATTGAGGGCAAGAGGATGGAAGTTCAAGAGCTGAAGGATAACCTTCTACGTAGATATAGCGGTTATATTACTAATCTGAGGCATGAATTTTCCAAAAAGAAGAAGAAAGAAAAACTACCAAAAGAAGCAAAGCAAATCTTACTTTCATGGTGGAATGTTCACTTTAAATGGCCATACCCAACGGATGCGGATAAGGTTGCCTTAGCTGAATGGACTGGTTTAGACCAAAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACAGAGGAAATGCACGCTGAAATTTTGGATGGTCTCTATGGATCCCTGGACGAGTGA 837 0.4325 MEKSLYDFYCSATYSDESTMAPFAPSNKPVFGKEEDVSKVLRAKVASHPLFPHLLHAYMDCHKVGAPQDVAHLLEGIKGEHTSGVCQISESEGFLGTDPELDDFMGTFCDLLVKYKSDLLKPFNEATMFLNLMETQLHSICNNTPPQPDEVTHGSPGKDLSRVKKEAIEGKRMEVQELKDNLLRRYSGYITNLRHEFSKKKKKEKLPKEAKQILLSWWNVHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPTEEMHAEILDGLYGSLDE* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1557 278 Pfam ELK domain 177 198 IPR005539 GO:0003677
Gso4g1557 278 SMART ELK_2 177 198 IPR005539 GO:0003677
Gso4g1557 278 SMART KNOX2_2 91 142 IPR005541 GO:0003677|GO:0005634
Gso4g1557 278 SMART KNOX1_2 39 83 IPR005540 GO:0003677|GO:0005634
Gso4g1557 278 SUPERFAMILY Homeodomain-like 198 269 IPR009057 -
Gso4g1557 278 Pfam Homeobox KN domain 217 256 IPR008422 GO:0003677|GO:0006355
Gso4g1557 278 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 276 - -
Gso4g1557 278 ProSiteProfiles ELK domain profile. 177 197 IPR005539 GO:0003677
Gso4g1557 278 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 27 276 - -
Gso4g1557 278 ProSitePatterns 'Homeobox' domain signature. 235 258 IPR017970 GO:0000981|GO:0006355
Gso4g1557 278 SMART HOX_1 199 264 IPR001356 GO:0003677
Gso4g1557 278 Pfam KNOX2 domain 96 141 IPR005541 GO:0003677|GO:0005634
Gso4g1557 278 Coils Coil 165 185 - -
Gso4g1557 278 CDD homeodomain 212 260 IPR001356 GO:0003677
Gso4g1557 278 Gene3D - 195 269 - -
Gso4g1557 278 ProSiteProfiles 'Homeobox' domain profile. 197 260 IPR001356 GO:0003677
Gso4g1557 278 Pfam KNOX1 domain 41 79 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1557 Gso-Chr4 45039576 45048231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1557 5 276 Homeobox Transcription Factor Family AT1G23380 49.821 3.80e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso4g1557 KNOX2 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1557 - - gmx:102662019 568.54