Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1522 ATGGTGGCCAGGTCATGCTTGAATTTGTTGGATCTGGTATCAGGGGATACGCTAAATTTCCCTCGGACTCCCAGATCCCTTCCGCGAGTTATGACTGATCCAGTAATCATGTCTGATGGAGATGTTAAAGAAAGTAATGATGATGATTCGAGTTTTTTCTCGTCAGAACACCATCGGAGGATAATTATAGTATCAAATTCTCTCCCTCTCAATGCAAAAAGGGATAAAATATCTGGCAAATGGTGCTTCAGTTATGACGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTCTCTCTCCTGATGCTGATGTTGTTTATGTGGGATCTCTCAAGGTTGATGTTGATGCAAATGAGCAAGAGAAAGTTTCCCTTCAGTTGCTGGAGGAATTCAATTGCGTGCCTACTTTTATTCCTTCAGACCTCTACAAACAATTCCATGATGGTTTCTGCAAGCAACAATTGTGGCCTCTATTCCATTACATGATGCCCGTGTATCCAGGCAATCGCCACTTTGATAGGTCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTCCTTCCAACATTTCTGCGAAAGCGGTGTAGTCGAGTCAGGCTTGGTTTTTTCCTCCACAGTCCATTTCCTTCATCAGAAGTTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCATTGCTTAATGCAGATTTAGTTGGTTTCCACACCTTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGGCGAATGCTAGGCTTGGAACATGAATCCAAAAGGGGTTACATTGGGCTTGAATACTTTGGCCGTACAATATTCATTAAAATATTGCCTGCGGGGATTCACATGGGTCGAGTTCAATCAACCTTAGATCACCCTTCCTCTTCCAACAAAGTCAGAGAAATCCACCAACAATTTAAAGGGAAAAAGCTTATAGTTGGTGTTGATGATATGGACTTATTCAAAGGTATCAGTTTAAAATTCTTGGCCATAGAGCAACTCCTGCAGCAATATCCAGAACGGCAAGGTGAATTAATATTGATCCAAATTTTAAATCCCCCAAGTAGTTCTGACAAAGATGTTGAGGATGCAAAGGAGGATGCCTACATTACAGCCAAAAGGATAAATGAAAGGTTTGGTTTGGAAGGTTATGAACCTATCATCATCATTGATTGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTGCGTGATGGTTTGAATTTGGTTCCATACAGGTACACTGTGTGTAGGCAGGGAAGTTCTAAACTAGACGAAGCTTTAGAAATTGCTTCTGACTTCCCGCGTGTAAGTGCACTTGTCGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGGGCAATAAGGGTAAACCCATGGGATATTGATGCAGTAGCTGAAGCACTTAATTTGGCAATCACAATGCCTGATGGAGAGAAGCAGCTTCGACATGAAAAGCACTATCGATATGTTAGTTCTCATGATGTGGCATACTGGGCTCGAAGCTTTGAGCAAGATCTAGTGTTCTCGTGCAAGGATCACTATAGTAACCGATGCTGGGGCATTGGCTTTGGCCTGAATTTCAGAATTTTGTCCCTCTCTCCTAGTTTCAGGAGGCTATCCATAGACCACATTGTCCCTGCATATGAGAGGTGCAGTTGCAGGGCAATATTTTTGGATTATGATGGTACAGTTGTACCTGAAGCTTCCATTGTTAAAGCACCCAGTCCCGAAGTCATATCTGTGCTAAATAATCTCTGCAGTGATGTTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAAACCTCACTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCATAAGGTGGGGTAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGCAAAAGATTGCTGAACCTGTGATGAGATCTTATATGGAGGCCACAGACGGTTCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTGTGGCATTACCGTGATGCCGATCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGCTGGATCACCTTGAAAATGTACTTGCAAATGAGCCTGTTGTTGTAAAAAAAGGGCAACATATTATTGAAGTCAAGCCTCAGGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTGATGAGGACATGTTTGAGAGCATACTAGCCAAACCTTATAGTGCTACCTCCTTCTCAGCACCACAAATATTTGCATGCACTGTTGGACAAAAACCGAGCAAAGCCAGGTACTACCTAGATGACACTGTGGATGTGATGACATTACTTAAGGGTCTTGGTGCGGCTTCAGGGCCTAAATCAAGATGCTCTACAGAAACCCCTTTTGAGAAAAGAGAAGTATGTTTTGAGAATGATGTTTAA 2598 0.4215 MVARSCLNLLDLVSGDTLNFPRTPRSLPRVMTDPVIMSDGDVKESNDDDSSFFSSEHHRRIIIVSNSLPLNAKRDKISGKWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDANEQEKVSLQLLEEFNCVPTFIPSDLYKQFHDGFCKQQLWPLFHYMMPVYPGNRHFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVRLGFFLHSPFPSSEVYKTLPVRGEILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYFGRTIFIKILPAGIHMGRVQSTLDHPSSSNKVREIHQQFKGKKLIVGVDDMDLFKGISLKFLAIEQLLQQYPERQGELILIQILNPPSSSDKDVEDAKEDAYITAKRINERFGLEGYEPIIIIDCHVPFYEKAAYYALAECCIVNAVRDGLNLVPYRYTVCRQGSSKLDEALEIASDFPRVSALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVFSCKDHYSNRCWGIGFGLNFRILSLSPSFRRLSIDHIVPAYERCSCRAIFLDYDGTVVPEASIVKAPSPEVISVLNNLCSDVNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIRWGKHTSWQMSHADTDFAWQKIAEPVMRSYMEATDGSSVETKESALVWHYRDADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIIEVKPQGITKGSVAQEVLSSLTKKGKSPDFVLCIGDDRSDEDMFESILAKPYSATSFSAPQIFACTVGQKPSKARYYLDDTVDVMTLLKGLGAASGPKSRCSTETPFEKREVCFENDV* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1522 865 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Gso4g1522 865 Gene3D - 593 825 IPR023214 -
Gso4g1522 865 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 792 IPR006379 -
Gso4g1522 865 Pfam Trehalose-phosphatase 594 827 IPR003337 GO:0003824|GO:0005992
Gso4g1522 865 TIGRFAM T6PP: trehalose-phosphatase 591 836 IPR003337 GO:0003824|GO:0005992
Gso4g1522 865 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 851 IPR001830 GO:0003824|GO:0005992
Gso4g1522 865 Gene3D - 673 753 - -
Gso4g1522 865 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 851 - -
Gso4g1522 865 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Gso4g1522 865 Gene3D Glycogen Phosphorylase B; 51 311 - -
Gso4g1522 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Gso4g1522 865 CDD HAD_TPP 592 832 - -
Gso4g1522 865 Gene3D Glycogen Phosphorylase B; 312 528 - -
Gso4g1522 865 SUPERFAMILY HAD-like 591 838 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1522 Gso-Chr4 44162467 44169104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1522 1 863 Trehalose Biosynthesis Gene Families AT1G23870 64.203 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1522 K16055 - gmx:100787744 1690.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1522 4 44162467 44169104 Gso6g1552 6 15979131 15986154 GST
Gso5g0301 5 3131176 3134646 Gso4g1522 4 44162467 44169104 PCT
Gso4g1522 4 44162467 44169104 Gso5g0301 5 3131176 3134646 PCT