Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1503 ATGGGTGGCAACGGCAAGCACAGGTGGAAATTCTCCTTCCACCGTTCCTCATCCCAAACCTCCAATCCCGACCCGAACCAAGTTCCCAAGGAGTTCACCTGCCCCATTTCCGGCTCACTAATGTCCGACCCTGTCGTCGTAGCCTCGGGCCAAACCTTCGAACGCCTCGCCGTTCAACTCTGCAAAGACCTCAACTTCTCCCCGAAGCTGGACGACGGCACCCGACCCGACTTCTCCACCATAATCCCCAACCTCGCCATCAAAACGACGATCCTCCACTGGTGCGACAATTCCCGCACCCAACCCCCGCTCCCACCGGATTACGCCTCCCTCGAGCGCCACGTCAGAGAAGAAAAAGAAAAACAAGACCTAATTAGGGTTTCCGAAAAGGAGCTTCTCAACGCGGTGGCCGACAACCCTCCTGTCATCTTCTCCCATGCCGCCACCGAGTTAGGCCCCCGAGTCAATCACTTCAACTCCGGATCCTCCTCCGAGGAATCCGTCATCATCCCTCCGAGTCCGGGAACGCCGTTGCCGTTAACGATTCGTCCAACGTGCTTCTCTTCCTCCTCCTCCTCCTGCGAGATCGAAATCGAAAACCCCAACACACCAGCATCGGAGGAGGAAGAAGGGATATTGAAGAAATTGAAGAGTAACGAGGTGTTTGAGCAAGAAGAAGGCGCAATCGCGCTGAGGAAGATCACGAGGAGCAAAGAGGAGGCTAGGGTTTCGCTCTGCACGCCGCGGGTGCTGTTAGCGCTTCGTGGTTTACTCGCTTCCCGATACGGCGTCGTTCAGGTCAACGCAGTGGCGTCTTTGGTCAACCTTTCTCTTGAGAAGCAGAACAAGTTGAAGATCGTTAGGTCAGGGTTTGTGCCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCACTTTTTAGTTTGGCTTTGGACGATGACAACAAGATGGCGATTGGCGTTCTCGGCGCGTTGCATCCGTTGATGCACGCTCTTCGTGCCGAGTCCGAGCGGACTCGGCACGACTCAGCGCTCGCGCTGTATCATTTGTCACTTGTACAGAGCAACAGATTGAAATTGGTTAAACTCGGGGCTGTCCCCACGCTCCTCTCGATGGTGGTGGCGGGGAATTTGGCGAGCCGGGTGCTGCTGATTCTCTGCAACCTCGCCGTGTGCACCGAGGGGCGCACGGCGATGCTGGACGCCAACGCGGTGGAGATTCTGGTGGGGTTATTACGAGGGAACGAGTTGGACTCGGAGGCGAATCGGGAGAATTGCGTGGCGGCTTTGTACGCGCTGAGTCATAGAAGCTTGAGGTTCAAGGGTTTGGCCAAGGACGCGAGAGTGGTGGAGGTTTTGAAGGAGATCGAACAAACGGGAACGGAGAGGGCGAGGGAGAGGGCGAGGAAGGTGTTGCATATGATGAGGACTGTGGGAGATGGGGACGGTGATGAGATTGACGAGTTTTACGACTCGGCCGGATTGACTCGGAATCGGTACCGAGTTGGTGCTGCCAGGAATAACAACAACCTCGTCAACACGACCACGTTTTAG 1578 0.5608 MGGNGKHRWKFSFHRSSSQTSNPDPNQVPKEFTCPISGSLMSDPVVVASGQTFERLAVQLCKDLNFSPKLDDGTRPDFSTIIPNLAIKTTILHWCDNSRTQPPLPPDYASLERHVREEKEKQDLIRVSEKELLNAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIPPSPGTPLPLTIRPTCFSSSSSSCEIEIENPNTPASEEEEGILKKLKSNEVFEQEEGAIALRKITRSKEEARVSLCTPRVLLALRGLLASRYGVVQVNAVASLVNLSLEKQNKLKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRAESERTRHDSALALYHLSLVQSNRLKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVEILVGLLRGNELDSEANRENCVAALYALSHRSLRFKGLAKDARVVEVLKEIEQTGTERARERARKVLHMMRTVGDGDGDEIDEFYDSAGLTRNRYRVGAARNNNNLVNTTTF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1503 525 Pfam U-box domain 28 97 IPR003613 GO:0004842|GO:0016567
Gso4g1503 525 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Gso4g1503 525 PANTHER U BOX DOMAIN-CONTAINING 1 516 - -
Gso4g1503 525 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 516 - -
Gso4g1503 525 CDD RING-Ubox 34 80 - -
Gso4g1503 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Gso4g1503 525 MobiDBLite consensus disorder prediction 1 31 - -
Gso4g1503 525 SMART arm_5 361 399 IPR000225 GO:0005515
Gso4g1503 525 SMART arm_5 400 443 IPR000225 GO:0005515
Gso4g1503 525 SMART arm_5 279 319 IPR000225 GO:0005515
Gso4g1503 525 SMART arm_5 320 360 IPR000225 GO:0005515
Gso4g1503 525 Gene3D - 197 490 IPR011989 -
Gso4g1503 525 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Gso4g1503 525 MobiDBLite consensus disorder prediction 14 28 - -
Gso4g1503 525 SUPERFAMILY ARM repeat 212 483 IPR016024 -
Gso4g1503 525 SUPERFAMILY RING/U-box 14 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1503 Gso-Chr4 43876659 43878799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1503 1 525 U-box Gene Family AT5G65200 58.348 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1503 - - gmx:100784564 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1503 4 43876659 43878799 Gso6g1564 6 16148280 16150443 GST