Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1496 ATGGTCAAATCCTCCTCCAAGAATGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACACAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATTTTGAAATGATCTCCCTTGATGAAGCTGCAAAGTTGTTGCTTGGAAATGCCAATAATAGAACAAAAGTTAGACGCCTATACGATATTGCGAACGTTTTATCCTCCATGAACCTAATTGAGAAGGTGATATTCTCCTCAGTTCACTTTAAATTTCCCCATAGAGCATTACAATGGAAGTGTTGCTTTCTGTATTCTGTTCTAATAAATTACAGTAAGCTTATGATGAGTTTACGAAGGTTGCAGACCCATACAACAAACACAAGAAAACCAGCATTTAGGTGGTTGGGTGTGAGAGGGAAAACATGGAGTGAATCAGCTCAGACAAATGTTAAAGAGTCACAGAAAAGGATGTTTGGATCTGACATAACAAACATAAATTTTAAAAGGAAAGTTGATTTGTCCATGGATGGCCAGAACTTTAAAACGCAAAACCAACAGGAAAATATTAGTCCCAGAGCTCAGCTGGAGAAAAAAAGCTTAAAAAAAGATGCAAAACAGACTTCAATGAGCTATCAGTTTGGCCCTTTCGCTCCAGCTTATGTGCACAAAGTTGGAACCTCTGAAAATAATAGTGTGAAACAGGTGCAAGACTGGGAAAGCCTCGCACAGGAGCATCGTCCTCAATATCAAAACCAAGCTTTGAAAGATCTATTCTCTCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGCTGCTAAAACTTTATAA 804 0.3818 MVKSSSKNENRREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNANNRTKVRRLYDIANVLSSMNLIEKVIFSSVHFKFPHRALQWKCCFLYSVLINYSKLMMSLRRLQTHTTNTRKPAFRWLGVRGKTWSESAQTNVKESQKRMFGSDITNINFKRKVDLSMDGQNFKTQNQQENISPRAQLEKKSLKKDAKQTSMSYQFGPFAPAYVHKVGTSENNSVKQVQDWESLAQEHRPQYQNQALKDLFSHYMEAWKSWYSEAAKTL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1496 267 SUPERFAMILY "Winged helix" DNA-binding domain 10 77 IPR036390 -
Gso4g1496 267 SMART E2F_TDP_2 11 91 IPR003316 GO:0005667|GO:0006355
Gso4g1496 267 PANTHER TRANSCRIPTION FACTOR E2F 112 262 IPR015633 GO:0000978|GO:0006357
Gso4g1496 267 PANTHER TRANSCRIPTION FACTOR E2F 6 90 IPR015633 GO:0000978|GO:0006357
Gso4g1496 267 Pfam E2F/DP family winged-helix DNA-binding domain 13 73 IPR003316 GO:0005667|GO:0006355
Gso4g1496 267 Gene3D - 5 91 IPR036388 -
Gso4g1496 267 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 112 262 - -
Gso4g1496 267 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1496 Gso-Chr4 43726335 43732268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1496 10 72 E2F-DP Transcription Factor Family AT3G48160 39.683 2.61e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso4g1496 E2F_TDP 3.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1496 K09391 - gmx:100776170 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1496 4 43726335 43732268 Gso6g1571 6 16271180 16292946 GST
Gso5g0277 5 2900602 2904132 Gso4g1496 4 43726335 43732268 PCT
Gso17g0787 17 7324092 7328411 Gso4g1496 4 43726335 43732268 PCT
Gso4g1496 4 43726335 43732268 Gso5g0277 5 2900602 2904132 PCT
Gso4g1496 4 43726335 43732268 Gso17g0787 17 7324092 7328411 PCT