Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1479 ATGGATCCTCCTCTCATCAGCGACTCCACATTCTCCCCCGCTTACTCCCTCGCCGAGATTTGGCCTGGAATGCCCCATTTTCCCGATCACTCTCACCTCACCGCCACCGCTCCCACCAAGGGAAAGGACTCCACCGCCGCCGACGAGGTCCTCTCCTCCACCACCACTGCCAACCTATCCAATAATGATTCTGGTAGCAACAAACGGATGAAGGTAGGAGGGTCCAGTTTTGAAAACGATGGTTTCAAAGCGGAGGCAGAAGCAAGTTCTGTGGGTGGTAACAAGTCAAGTGAGCAAAGCAATAAACCTTGTGAGGCACCTAAGCCAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATCGGTAAAGCACTTGTCCTAGATGAGATAATCAACTACATCCAGTCGCTGCAGCGTCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACACGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCATCACATCCTGGGTGGCTGCATATGCAGATAGGTGGTGGGTTTGAGACAACATAA 732 0.4863 MDPPLISDSTFSPAYSLAEIWPGMPHFPDHSHLTATAPTKGKDSTAADEVLSSTTTANLSNNDSGSNKRMKVGGSSFENDGFKAEAEASSVGGNKSSEQSNKPCEAPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNTNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSHPGWLHMQIGGGFETT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1479 243 Pfam Helix-loop-helix DNA-binding domain 124 171 IPR011598 GO:0046983
Gso4g1479 243 Gene3D - 117 195 IPR036638 GO:0046983
Gso4g1479 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 170 IPR011598 GO:0046983
Gso4g1479 243 PANTHER BNAC05G07950D PROTEIN 42 242 - -
Gso4g1479 243 CDD bHLH_AtBPE_like 110 195 - -
Gso4g1479 243 MobiDBLite consensus disorder prediction 37 73 - -
Gso4g1479 243 MobiDBLite consensus disorder prediction 26 108 - -
Gso4g1479 243 SMART finulus 126 176 IPR011598 GO:0046983
Gso4g1479 243 Coils Coil 167 187 - -
Gso4g1479 243 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 42 242 IPR024097 GO:0006355
Gso4g1479 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1479 Gso-Chr4 43473901 43478056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1479 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 49.653 2.35e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g1479 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1479 - - gmx:100306638 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1479 4 43473901 43478056 Gso6g1582 6 16433077 16437278 GST