Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1477 ATGGTAAGGTCTCCTTGTGAAAAAATCAATGTCAAAAGGGGTGTGTGGACTACAGAAGAAGATACAAAGAAGCTTGCATTTGGCTCCAAGCATAGATCTGGTAATTGGACCTCTGTCCCCAAAAAATCAAGGCTCAAAAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACTAACTACCCCAGGCCTGATCTTAAAGACGACAACTTCACTACCCAAAAAGATCTAATTATGAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAGTAGCCCAGCAACTTCCTGGGAGAACAGACAATGATGTAAAGAACTATTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGAATTGACCCTGTTACCCACAAGCCCTTCTCTAAACTCATTTCTGACTATGGAAACATTGGGGGTTGCCAGAAACCAAGTACTCCAATTACGTCAACTAATAAGGACTTCAAGGATGCAATGATGTTAGGATCAGATCCCCGTCAAACCCTGCCACAAGGATTTACAAACATCAATGACCAGCCAAAGCTATCACCCAAGACCATCCCAGTGTCTATGTTTGGGGAAGATTGCTTGTCAAAAACTTCTTCACCATCTACTCCTTCTACATGTTTCACTTCTTCAGCTTTTAGTTGGAATGACTTCCTCTTGGAAGATGCTTTTATACCATTTGCTAACCAAGAACAAAGACTTGGTGAGCCAAATAGAGGATGTGACCATGCAAAGTTGTTGGAATAA 750 0.4213 MVRSPCEKINVKRGVWTTEEDTKKLAFGSKHRSGNWTSVPKKSRLKRCGKSCRLRWTNYPRPDLKDDNFTTQKDLIMKLHAAIGSRWSIVAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLISDYGNIGGCQKPSTPITSTNKDFKDAMMLGSDPRQTLPQGFTNINDQPKLSPKTIPVSMFGEDCLSKTSSPSTPSTCFTSSAFSWNDFLLEDAFIPFANQEQRLGEPNRGCDHAKLLE* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1477 249 CDD SANT 86 110 IPR001005 -
Gso4g1477 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Gso4g1477 249 Gene3D - 6 66 - -
Gso4g1477 249 Gene3D - 70 126 - -
Gso4g1477 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 114 IPR017930 -
Gso4g1477 249 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso4g1477 249 PANTHER F14D16.11-RELATED 1 234 - -
Gso4g1477 249 CDD SANT 16 59 IPR001005 -
Gso4g1477 249 Pfam Myb-like DNA-binding domain 74 108 IPR001005 -
Gso4g1477 249 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Gso4g1477 249 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Gso4g1477 249 ProSiteProfiles Myb-like domain profile. 61 110 IPR001005 -
Gso4g1477 249 SMART sant 12 62 IPR001005 -
Gso4g1477 249 SMART sant 65 112 IPR001005 -
Gso4g1477 249 PANTHER F14D16.11-RELATED 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1477 Gso-Chr4 43448168 43449541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1477 1 139 MYB Transcription Factor Family AT3G28470 65.957 1.46e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g1477 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1477 K09422 - gmx:102659885 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1477 4 43448168 43449541 Gso6g1584 6 16458712 16460579 GST