Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1457 ATGGCGGGTGGGAGCGTCTTCTGCTCCACTTCTTCTTCTTCTTCTAATTTAACAACAACCACTCAGCCTCCTCTCGATTCTCTTTTCCTCTCTGCCTCTTCCCCTTTCCTCGGTTCAAGATCTATAGTGAGTTTTGGAGATGTTCAAGGAGGGAAGGGGTGCAATGACTCGTTCTTCAGTTCCTACGATGAGCATGGGGATCATGAGGACATGGACGAGTACTTCCACCAGCCAGAGAAGAAGCGCAGGCTCTCGGTAGAGCAAGTGCGGTTTCTTGAGAAGAGCTTTGATGAGGAGAACAAGCTCGAACCTGAGAGGAAGATTCGGCTAGCCAAGGAACTCGGCTTGCAGCCGAGGCAGGTGGCGATTTGGTTTCAGAACCGCCGCGCGCGGTGGAAGACCAAGCAGATGGAAAAGGACTATGATTCCCTGCAGGCTAGCTACAATGATCTCAAGGCCAATTATGACAACCTTCTCAGGGAAAAGGTTAAGCTCAAAGCTGAGGTGGCAAGGCTCACTGAGAAGGTGCTTGGAAGAAAGAAAAATGAGGGGAACTTGGAACAGGCTGAAACCAACGGATTGCAGGAGCCACTGCAGAAGTCTTTGGCTGATTCAGCCTCAGAGGGTGAAGGGTCCAAAGTGTCTATTGGGGCTTGTAAACAGGAGGACATTAATTCAGCCAAGAGTGACATATTTGATTCATCAGAAAGCCCACATTGCACTGATGGAATCCACTCTGCACTTCTAGAGACAGGTGACTCTTCTTATGTGTTTGAACCTGATCAATCGGATGTGTCTCAGGATGAAGAAGATAACCTGAGCAAGACCCTTTTGCCTCATTACATCTTTCCCAAACTTGAAGATGTTGATTACTCCGACCTGCCTCATGGTTCATGTAATTTTGGAATTCCGGAGGAGGATCAAGCCATTTGGTCTTGGCCTTACTGA 948 0.4842 MAGGSVFCSTSSSSSNLTTTTQPPLDSLFLSASSPFLGSRSIVSFGDVQGGKGCNDSFFSSYDEHGDHEDMDEYFHQPEKKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKVKLKAEVARLTEKVLGRKKNEGNLEQAETNGLQEPLQKSLADSASEGEGSKVSIGACKQEDINSAKSDIFDSSESPHCTDGIHSALLETGDSSYVFEPDQSDVSQDEEDNLSKTLLPHYIFPKLEDVDYSDLPHGSCNFGIPEEDQAIWSWPY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1457 315 SMART HOX_1 78 139 IPR001356 GO:0003677
Gso4g1457 315 CDD homeodomain 80 136 IPR001356 GO:0003677
Gso4g1457 315 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Gso4g1457 315 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Gso4g1457 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 7 312 - -
Gso4g1457 315 SUPERFAMILY Homeodomain-like 59 137 IPR009057 -
Gso4g1457 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 312 IPR045224 GO:0003700
Gso4g1457 315 MobiDBLite consensus disorder prediction 183 214 - -
Gso4g1457 315 MobiDBLite consensus disorder prediction 187 208 - -
Gso4g1457 315 Coils Coil 134 175 - -
Gso4g1457 315 Gene3D - 74 143 - -
Gso4g1457 315 Pfam Homeobox associated leucine zipper 135 176 IPR003106 GO:0006355|GO:0043565
Gso4g1457 315 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Gso4g1457 315 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Gso4g1457 315 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1457 Gso-Chr4 42981892 42984331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1457 1 223 Homeobox Transcription Factor Family AT3G01470 42.982 7.11e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso4g1457 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1457 - - gmx:732618 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1457 4 42981892 42984331 Gso6g1600 6 16736608 16739166 GST