Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1451 ATGGAAACTAGCAAGTTCAGTTTGCTATTCTTTTACGTAATTTGTCTTGCTATATTCCCTACCCTTAACGCTAACATAGGTCACTTCGATCATGTCTGGCATAGGCGATTAAAAGAAGCAAGAGAAGCCGCAAAACAAGCTTACAAGCCGAACCCCATGAAAGTTACCGCTGAGTTCAATACACATGTCATCAGGGCAATGAGAGGCTCCAACAACTCAAGAAGGGGCTTATCAAACCAATACGATGGTCCATGCAAGGCGACAAACCCCATTGACAAATGTTGGAGATGTGACCCCAATTGGGAGAAAAACCGCAAGAGGCTAGCAGATTGTGCCCTAGGCTTTGGCCATGGCACAACAGGGGGCAAAGATGGCAAAATTTACGTGGTTAACGACTCTTCCGACAATGACCTCGTAAACCCTAAACCAGGGACATTGAGACATGCTGCAATTCAAAGAGAGCCACTGTGGATCATTTTTGATCGAAACATGAACATTAAACTTCACGCGGAGCTCATGCTAACGGATAATAAGACCATAGATGCACGTGGTGCCAATGTGCACATTAGTGAGGGTGCCCAAATAACGTTGCAATATGTGAAAAACATCATCATTCACGGTCTGCACATTCATGACATTAAGAAATGTAGTGGTGGCCTCATCAGAGACTCCATGGATCACTATGGAGTCCGTGCCATGAGTGATGGGGATGCCATTTCGGTGTTTGGATCCACATATGTTTGGATAGATCATGTTTCCTTTACCAACTGCGATGACGGTCTCATCGATGTCGTTAGCGCTTCAACTGCTGTTACCATCTCCAACTGCCATCTTACCAAACATAACGATGTATTATTATTTGGTGCGAGTGATAGCTACTCGGGGGATAAAATCATGCAAGTGACTTTGGCTTTCAACCATTTCGGGAAAGGATTGATTCAGAGGATGCCAAGGTGCAGATGGGGCTTCTTTCATATTGTTAACAATGACTACACGCATTGGCTAATGTACGCCATAGGTGGTAGCCAACAACCCACCATCATCAGCCAGGGCAACCGGTTTATCGCCCCAAATGACCGAAATGCCAAAGAAGTGACAAAAAGGGACTATGCACCAGAAAGTGTGTGGAAGAACTGGAATTGGAGATCAGAGGGTGATTTATTGATGAACGGAGCCTTCTTTGTTCAGTCTGGGAAAAACGTAGCAAAAAATCCCAAGGCAGAAATCATAGCAAAGCCTGGGAAAGCCGTATCGAGTCTCACTCGCTTTGCAGGTCCTCTAAAATGTGAAGTAAACAAGTCGTGTTGA 1308 0.4488 METSKFSLLFFYVICLAIFPTLNANIGHFDHVWHRRLKEAREAAKQAYKPNPMKVTAEFNTHVIRAMRGSNNSRRGLSNQYDGPCKATNPIDKCWRCDPNWEKNRKRLADCALGFGHGTTGGKDGKIYVVNDSSDNDLVNPKPGTLRHAAIQREPLWIIFDRNMNIKLHAELMLTDNKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDIKKCSGGLIRDSMDHYGVRAMSDGDAISVFGSTYVWIDHVSFTNCDDGLIDVVSASTAVTISNCHLTKHNDVLLFGASDSYSGDKIMQVTLAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSQQPTIISQGNRFIAPNDRNAKEVTKRDYAPESVWKNWNWRSEGDLLMNGAFFVQSGKNVAKNPKAEIIAKPGKAVSSLTRFAGPLKCEVNKSC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1451 435 PANTHER PECTATE LYASE 18-RELATED 6 435 IPR045032 GO:0030570
Gso4g1451 435 Pfam Pectate lyase 176 354 IPR002022 -
Gso4g1451 435 PANTHER PECTATE LYASE 6 435 - -
Gso4g1451 435 SMART amb_all 163 360 IPR002022 -
Gso4g1451 435 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Gso4g1451 435 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Gso4g1451 435 Gene3D - 88 428 IPR012334 -
Gso4g1451 435 SUPERFAMILY Pectin lyase-like 89 426 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1451 Gso-Chr4 42923609 42926552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1451 1 435 Polysaccharide Lyase AT5G15110 52.331 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1451 K01728 - gmx:100801864 903.279