Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1446 ATGGCGACCACTATCAGCGGCATCCCGCTGGTGGCGCTGCAAGTCAAGGCGCTCTTGAAGAAGAACCTCTTGCTGTCATGGCGGAACAAGAGGGCGAGTCTGCTACAGTTACTCTCCCCTTTCATGTTCATTTTCCTCATCTTCGCAATCGACAAAGCCATGAAGGCAAAGACCTCGACCTCTTCCTCCTACAAGAGCGTCACAGAACCTCCCATGGAGCCTTCTCTCCCCATCACCCCCTGCGAGGACAAGCTCTTCATCAATCTCCCCTGCTACGACTTCGTCTGGAGCGGCCACCAGAGCCCCAAGTTTCGGATCATCGTTGCCCGCATCATGAACAACAACCCTGGCCGACCCATCCCTCCCTCCAAGGTGAAATCGTTTAAGGACAAGAGTGAAGTGGATGCATGGCTTTTCAGTAACCCTATGCGGTGTCCAGCGGCGCTTCATTTTATAGAGCGAAACGATACCGTTATAGGCTACGGTCTTCAGACGAATTCCACCAGTCTTCAGCGGCGAGGGAAGTTCGAGAACCCCACGGCGTCGTTTCAGCTTGCCGCAGAACGTGAAATTGCCAGATACCTTATTGGAGACGCGGAATTCAGTTGGAATGTTTTTCTGAGGGAATTCGCGCACCCTTCCACGACTCCTTTCTCTGTTGTGGCTTCAATTGGTCCAGCGTTTTTCCTCGTGATCGCCATATTTAATTTTGTTCTTCAGATTAGGTCTTTGGTCACGGAGAAAGAGCTTAAACTTCGCCAGGCAATGACTATGATGGGGCTTTACGACTTTGCTTACTGGTTTTCCTGGCTCATCTGGGAGGCAGTTGTCGCAATCCTATCGTCCCTCCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTCGCTTTTTCTTGGATAACAGTTTTGTGGTCCTGTTCTTTTTTTTCTTCCTATTTGAACTTAGTATGACTGGCTTGGCCTTCATGATATCTGCTTTCATTCGGAAATCATCTTCGGCAACAACAGTGGGGTTCTATATATTTATTGTGGGCTTTGTGACTCAGCTTGTGGCACTAGTAGGATTTCCTTACAAAGATAGCTTCTCCAAAACCACACGAAATTTGTGGTCATTATTCCCCCCCAATCTTTTTTCTCAAGGTATAAATGTGCTTTCAGATGCAGTTGCAACTTCTGAAGACAAAGGTGTTAGCTGGAGTAAACGGGGAGAATGTGCTCTTAACAAAACAGACTGTGTTATAACTATTGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAATCAATATGGTATTTTCTAAATCCCAATTATTGGATGGGCAAAGGAGGTCAAAAAGTGAAAGAGGGTGGGGTTTGTAGCTGTATAGGTTCAGCCCTATGTCAAGAACAAAGTACACCAGATGATGATGTCCTTGAAGAAGAAAACAAAGTGAAACAGCAACTAACAGAAGGTCTTGTTGATGCAAATATTGCTGTTCAGATACGTGGCCTTGCAAAGACATACCCTGGCACACGTAGCATTGGTTGCTGCTTTAAATGTAAAAGAACTTCACCTTACAATGCTGTTAAGGGTTTGTGGGTGAACTTTGCAAAGGATCAGTTATTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACTACAGCTATTAATTGTTTGGCAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGACATTCAATCAGAAGTTCTAGTGGCTTGTCAAACATTCAAAAGCTTATAGGAGTATGTCCACAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCCAACTCTTCGCTACTATTAAAGGCCTGTCCCCATCTTCCATAAAATCAATTACCCAGACTTCATTAGCAGAGGTGAGACTCACGGATGCATCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGACTACTGGTATGGATCCAATAATAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAGAGAGGGCGTGCCATTGTTCTTACAACACACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGTATCATGGCAAAAGGAAGTCTTCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTGCTGGTTTTATTGCTAATATCAGCTTCAATGGAAACAATATTGAATGTAGTCCTGCCAGTGGAGATGCAATATCTACAGAACATCATGAGGCAGTGAAGAAATTGTTTAAGAATCATTTAGATGTAGTGCCAAAAGAGGAGAACAATAACTTCCTAACTTTTGTGATTCCTCATGACCGAGAGGCGCTCCTGAAAAATTTCTTTTCAGAGCTCCAAGATCGAGAAAAAGAATTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTCGAAGAAGTTTTCTTGAATATTGCAAGACAAGCAGAGCTTGAAAGCGCTGCAGCTGAAGGGAGACTAGTGACACTGACCTTAACATCTGGGGAATCTGTGCAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAAACCCTACTTGGTTCATGGTAGAAGTATACTGGGAACAAGATGATACTGGTGCCTTATGCATTGCCAGCCACTCACAGAAGGTTCCTATTCCTCATGGCGTTCAACTATCATCTTCTCCTTCTAGAAGACACCGTAGATATTTAGGCCAGTCAGGAACAGTTCATGGGGTTGTGATTGATCCAAGTCAAGTTAGTTCAGTGGATTTTCAATGA 2889 0.4427 MATTISGIPLVALQVKALLKKNLLLSWRNKRASLLQLLSPFMFIFLIFAIDKAMKAKTSTSSSYKSVTEPPMEPSLPITPCEDKLFINLPCYDFVWSGHQSPKFRIIVARIMNNNPGRPIPPSKVKSFKDKSEVDAWLFSNPMRCPAALHFIERNDTVIGYGLQTNSTSLQRRGKFENPTASFQLAAEREIARYLIGDAEFSWNVFLREFAHPSTTPFSVVASIGPAFFLVIAIFNFVLQIRSLVTEKELKLRQAMTMMGLYDFAYWFSWLIWEAVVAILSSLLIVLFGMMFQFRFFLDNSFVVLFFFFFLFELSMTGLAFMISAFIRKSSSATTVGFYIFIVGFVTQLVALVGFPYKDSFSKTTRNLWSLFPPNLFSQGINVLSDAVATSEDKGVSWSKRGECALNKTDCVITIDDIYKWLAATFFLWFVLAIYFDNIIPNASGVRKSIWYFLNPNYWMGKGGQKVKEGGVCSCIGSALCQEQSTPDDDVLEEENKVKQQLTEGLVDANIAVQIRGLAKTYPGTRSIGCCFKCKRTSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLAGITPVTDGDALIYGHSIRSSSGLSNIQKLIGVCPQFDILWDALSGQEHLQLFATIKGLSPSSIKSITQTSLAEVRLTDASKVRAGSYSGGMKRRLSFAIALIGDPKLVILDEPTTGMDPIIRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGSLRCIGTSIRLKSRFGAGFIANISFNGNNIECSPASGDAISTEHHEAVKKLFKNHLDVVPKEENNNFLTFVIPHDREALLKNFFSELQDREKEFGISDIQLGLTTLEEVFLNIARQAELESAAAEGRLVTLTLTSGESVQIPIGARFVGIPGTESAENPTWFMVEVYWEQDDTGALCIASHSQKVPIPHGVQLSSSPSRRHRRYLGQSGTVHGVVIDPSQVSSVDFQ* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1446 962 ProSitePatterns ABC transporters family signature. 661 675 IPR017871 GO:0005524
Gso4g1446 962 SMART AAA_5 552 736 IPR003593 -
Gso4g1446 962 Pfam ABC transporter 546 688 IPR003439 GO:0005524
Gso4g1446 962 Gene3D - 505 758 IPR027417 -
Gso4g1446 962 CDD ABC_subfamily_A 513 747 - -
Gso4g1446 962 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 929 IPR026082 GO:0016021|GO:0055085|GO:0140359
Gso4g1446 962 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 9 929 - -
Gso4g1446 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 741 IPR027417 -
Gso4g1446 962 Pfam ABC-2 family transporter protein 33 435 - -
Gso4g1446 962 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 513 759 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1446 Gso-Chr4 42657716 42664279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1446 556 758 Calmodulin-binding Proteins AT2G36910 23.810 4.50e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1446 - - gmx:100798138 1848.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1446 4 42657716 42664279 Gso6g1609 6 16859756 16866243 GST