Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1419 ATGAAGAAGAGACAGGTGGTGGTGAAAAGTGTGGCCAACACTTCATCTTCAGTGATGAGAAACATAAGATATGGTGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTTGATGGTTGCAGGGAATTCATGGCTAGTACAGGGGAAGGTGCTGGTGGGGCACTTACATGTGCTGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGAATACTGAAGTAGTTTGTGAGTACTCTCCTCCTAATTCTGGTCGCTAA 270 0.463 MKKRQVVVKSVANTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGAGGALTCAACGCHRNFHRREVNTEVVCEYSPPNSGR* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1419 89 Pfam ZF-HD protein dimerisation region 22 74 IPR006456 -
Gso4g1419 89 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
Gso4g1419 89 PANTHER MINI ZINC FINGER PROTEIN 3 4 86 - -
Gso4g1419 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
Gso4g1419 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1419 Gso-Chr4 41810333 41811232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1419 1 87 Zinc finger-homeobox gene family AT1G18835 75.281 1.39e-41 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso4g1419 ZF-HD_dimer 7.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1419 - - gmx:100785967 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1419 4 41810333 41811232 Gso6g1631 6 17266411 17267379 GST