Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1415 ATGGAGAATCAGCAACTCACGTTTTGGAAGTCCAATTATGAAATTGATGACTATCCATTTGCACCTACGTGCCAATTTTCTTCATATGATTATTGCAGCTGGGGTAATGCCAATGATGGGTATCATTGGCCATATGAATTTCCTTTGCAAGATAGCTATCTTGATGCTATCCCTTATATGAAGTGTTATTATCCTCATGACATTTTGTATGAAAGTACTCTTCCCATTGAACCAACCTCACTAAGCATAAGAGACTATGACTTTTCAGATGTTAAAAATGTGCTTTCTGCGTTGAACGAAACCGATGGTTCGGATCATAAACCTGCTTTTTCATCATGCAATGATGGAGAAAGTGTAGATGAAATGCAGGAAGATTTGAAGGGTAAGAAATGCAGAGAAGAGGGAATTAGTAGCAGTGCGAAAATGTTGTCAAGGAAAACCGTTTCTCAATACTTTTACATGCCAATATCTCAAGCCGCAAGAGAGCTCAATGTGGGCCTCACACACTTGAAGAAAAGGTGTAGGGAGTTAGGAATTCAGAGGTGGCCACATAGGAAGCTACTGAGTCTTCAAACCCTAATAAAGAATATACAAGAGCAAAGAGAGACCGGGGGCCATGAAAATGATGAAAAAACTAGGGCTGCCATTGAGATCTTGGAGAGAGAACAGAGGAAGGTGGAGGAAATGCCGGATTTGGAACTTGAGGATAATACAAGAAGGCTTAGACAAGCTTGTTTTAAGGCTAACTACAAGAAGAGGAAACTCATGGGGATGAGGCTCATTGAACCCGATTCTTCTCTTAGTGGTCTATTTAACAAGTATTGA 825 0.4024 MENQQLTFWKSNYEIDDYPFAPTCQFSSYDYCSWGNANDGYHWPYEFPLQDSYLDAIPYMKCYYPHDILYESTLPIEPTSLSIRDYDFSDVKNVLSALNETDGSDHKPAFSSCNDGESVDEMQEDLKGKKCREEGISSSAKMLSRKTVSQYFYMPISQAARELNVGLTHLKKRCRELGIQRWPHRKLLSLQTLIKNIQEQRETGGHENDEKTRAAIEILEREQRKVEEMPDLELEDNTRRLRQACFKANYKKRKLMGMRLIEPDSSLSGLFNKY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1415 274 ProSiteProfiles RWP-RK domain profile. 123 210 IPR003035 -
Gso4g1415 274 Pfam RWP-RK domain 143 190 IPR003035 -
Gso4g1415 274 PANTHER PROTEIN RKD1-RELATED 41 260 - -
Gso4g1415 274 PANTHER PROTEIN RKD4 41 260 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1415 Gso-Chr4 41729916 41739862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1415 129 258 AtRKD Transcription Factor Family AT1G18790 61.364 1.89e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso4g1415 RWP-RK 3.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1415 - - gmx:100782238 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1415 4 41729916 41739862 Gso6g1637 6 17340184 17341504 GST
Gso5g0221 5 2288707 2289966 Gso4g1415 4 41729916 41739862 PCT
Gso17g0842 17 7929105 7930260 Gso4g1415 4 41729916 41739862 PCT