Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1400 ATGACCAACAATTTGACTACTAAATCTCTTTTCACACAGAAGTATGGAACTTTGGACAAGGAAGAGGTTGAAGAGAATGCAAAGAGGATTGAGGATGTGGCTTTTGCTACTGCAAATCTACACTATGAGAAAGAGCCAGATGGTGATGGAGGTTCTGCAGTCCAGCTTTATGCCAAGGAATGTAGTAAGCTCCTCCTAGATGTTCTTAAAAAAGGACCTAGTAAAAAGGATAATGAAGTGGTGACAAGCATAGAGGTTGAAATGGAACACATTGATATTGGTGAACCTGAGAATACTGGTTTACCAATGCCAACTGCTGTTATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCCTTAGAAAATGCACATAAGGTGAACTGTGTTGTATTTGACAAAACAGGTACTCTCACAATTGGGAAGTCTGTGGTAGTAAATACAAAGCTGTTGACAAATATGGTACTCTGGGAATTCTATGAACTTGTGGCTGTAGCTGAGGTGAATAGTGAGCATCCACTGGCTAAGGCCATAGTTGAGTATGCCAAAAAACTGAGAGATGATGAGAACCCCATTTGGCTAGAGGCACAGGATTTTATGTCCATTGTTGGACATGGAGTTAAGGCCATGGTTAGAAACAAGGAAATACTTGTGGGTAACAAGAGCTTGATGGAAGACCACAATGTTGCACTTCCCATCGATGCTGAAGAGATGCTTGCAAAAGCCGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATTAATAGGGAAGTAGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTACACAAGAAATCATTTCCATTTTGAAGTCCATGAAAATTAGGAGCATCATGGTGACTGGGGACAATTGGGGAACTGCCAATTCTATAGCAAGGGAAGTTGGAATTGAAACAGTTATTGTTGAGGCCAAACCAGATCAGAAACCAGATTAG 981 0.4128 MTNNLTTKSLFTQKYGTLDKEEVEENAKRIEDVAFATANLHYEKEPDGDGGSAVQLYAKECSKLLLDVLKKGPSKKDNEVVTSIEVEMEHIDIGEPENTGLPMPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKSVVVNTKLLTNMVLWEFYELVAVAEVNSEHPLAKAIVEYAKKLRDDENPIWLEAQDFMSIVGHGVKAMVRNKEILVGNKSLMEDHNVALPIDAEEMLAKAEAMAQTGIIVSINREVVGVLAVSDPLKPATQEIISILKSMKIRSIMVTGDNWGTANSIAREVGIETVIVEAKPDQKPD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1400 326 SUPERFAMILY HAD-like 132 325 IPR036412 -
Gso4g1400 326 PRINTS P-type cation-transporting ATPase superfamily signature 137 151 - -
Gso4g1400 326 PRINTS P-type cation-transporting ATPase superfamily signature 266 277 - -
Gso4g1400 326 PRINTS P-type cation-transporting ATPase superfamily signature 288 298 - -
Gso4g1400 326 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 324 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso4g1400 326 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 95 325 - -
Gso4g1400 326 Pfam WPP domain 1 78 IPR025265 -
Gso4g1400 326 ProSitePatterns E1-E2 ATPases phosphorylation site. 139 145 IPR018303 -
Gso4g1400 326 Gene3D WPP domain 1 81 IPR038214 -
Gso4g1400 326 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 139 270 IPR023299 GO:0000166
Gso4g1400 326 Pfam haloacid dehalogenase-like hydrolase 133 324 - -
Gso4g1400 326 Gene3D - 104 326 IPR023214 -
Gso4g1400 326 Gene3D - 221 272 IPR023299 GO:0000166
Gso4g1400 326 Gene3D - 144 220 IPR023299 GO:0000166
Gso4g1400 326 PANTHER ATP7, ISOFORM B 95 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1400 Gso-Chr4 41262148 41269512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1400 93 326 Primary Pumps ATPases AT1G63440 75.745 3.07e-116 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1400 K17686 - gmx:106798586 568.926